Evidence map›Paper›PMID 28876229›Full record

ArticleActa crystallographica. Section F, Structural biology communications2017

3,6-Anhydro-L-galactonate cycloisomerase from Vibrio sp. strain EJY3: crystallization and X-ray crystallographic analysis.

Saeyoung Lee, Eun Ju Yun, Kyoung Heon Kim, Hye Yeon Kim, In Geol Choi

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. NADPJournal of microbiology and biotechnology · 2021
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Saeyoung LeeDepartment of Biotechnology, Korea University Graduate School, Seoul 02841, Republic of Korea.
Eun Ju YunDepartment of Biotechnology, Korea University Graduate School, Seoul 02841, Republic of Korea.
Kyoung Heon KimDepartment of Biotechnology, Korea University Graduate School, Seoul 02841, Republic of Korea.
Hye Yeon KimProtein Structure Group, Korea Basic Science Institute, Ochang, Chungbuk 28119, Republic of Korea.
In Geol ChoiDepartment of Biotechnology, Korea University Graduate School, Seoul 02841, Republic of Korea.

Funding

Korea Basic Science Institute C37969Korea Basic Science Institute T37230Korea Basic Science Institute T37412Ministry of Trade, Industry and Energy 10052721National Research Council of Science and TechnologyNational Research Foundation of Korea CRC-16-01-KRICTNational Research Council of Science and TechnologyNational Research Foundation of Korea NRF-2015M3D3A1A01064883
6 · The paper itself

Abstract

3,6-Anhydro-L-galactonate cycloisomerase (ACI), which is found in the marine bacterium Vibrio sp. strain EJY3, converts 3,6-anhydro-L-galactonate into 2-keto-3-deoxygalactonate. ACI is a key enzyme in the metabolic pathway of 3,6-anhydro-L-galactose (AHG). Study of AHG metabolism is important for the efficient fermentation of agar and biofuel production, because AHG is a sugar that is non-fermentable by commercial microorganisms. The aci gene from Vibrio sp. strain EJY3 was cloned, and the recombinant protein was overexpressed and crystallized in order to determine the structure and understand the function of the protein. The crystals diffracted to 2.2 Å resolution and belonged to space group P4

Indexed as

CrystallizationCrystallography, X-RayGalactoseIsomerasesMetabolic Networks and PathwaysPhosphopyruvate HydrataseRecombinant ProteinsVibrio3,6-anhydrogalactoseGalactoseIsomerasesPhosphopyruvate HydrataseRecombinant Proteins3,6-anhydro-l-galactonate3,6-anhydro-l-galactonate cycloisomerase3,6-anhydro-l-galactoseACIagarolytic pathwayAHGAAHG metabolismVibrio

Identifiers

PMID28876229
PMCPMC5619742

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.