Evidence map›Paper›PMID 28875244›Full record

ArticleBiotechnology letters2017

Improving Fab' fragment retention in an autonucleolytic Escherichia coli strain by swapping periplasmic nuclease translocation signal from OmpA to DsbA.

Desmond M Schofield, Ernestas Sirka, Eli Keshavarz-Moore, John M Ward, Darren N Nesbeth

Open access · hybridAbstract read
In one paragraph

Article in Biotechnology letters, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Establishing a NovelBiomolecules · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Desmond M SchofieldDepartment of Biochemical Engineering, University College London, Bernard Katz Building, London, WC1E 6BT, UK.
Ernestas SirkaCentre for Translational Omics, UCL Institute of Child Health & Great Ormond Street Hospital, 30 Guilford Street, London, WC1N 1EH, UK.
Eli Keshavarz-MooreDepartment of Biochemical Engineering, University College London, Bernard Katz Building, London, WC1E 6BT, UK.
John M WardDepartment of Biochemical Engineering, University College London, Bernard Katz Building, London, WC1E 6BT, UK.
Darren N NesbethDepartment of Biochemical Engineering, University College London, Bernard Katz Building, London, WC1E 6BT, UK. d.nesbeth@ucl.ac.uk.ORCID http://orcid.org/0000-0003-1596-9407
University College London · GBGreat Ormond Street Hospital · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesTo reduce unwanted Fab' leakage from an autonucleolytic Escherichia coli strain, which co-expresses OmpA-signalled Staphylococcal nuclease and Fab' fragment in the periplasm, by substituting in Serratial nuclease and the DsbA periplasm translocation signal as alternatives.

resultsWe attempted to genetically fuse a nuclease from Serratia marcescens to the OmpA signal peptide but plasmid construction failed, possibly due to toxicity of the resultant nuclease. Combining Serratial nuclease to the DsbA signal peptide was successful. The strain co-expressing this nuclease and periplasmic Fab' grew in complex media and exhibited nuclease activity detectable by DNAse agar plate but its growth in defined medium was retarded. Fab' coexpression with Staphylococcal nuclease fused to the DsbA signal peptide resulted in cells exhibiting nuclease activity and growth in defined medium. In cultivation to high cell density in a 5 l bioreactor, DsbA-fused Staphylococcal nuclease co-expression coincided with reduced Fab' leakage relative to the original autonucleolytic Fab' strain with OmpA-fused staphylococcal nuclease.

conclusionsWe successfully rescued Fab' leakage back to acceptable levels and established a basis for future investigation of the linkage between periplasmic nuclease expression and leakage of co-expressed periplasmic Fab' fragment to the surrounding growth media.

Indexed as

Bacterial Outer Membrane ProteinsBioreactorsCell SurvivalEndodeoxyribonucleasesEndoribonucleasesEscherichia coliEscherichia coli ProteinsImmunoglobulin Fab FragmentsMetabolic EngineeringProtein Disulfide-IsomerasesProtein Sorting SignalsRecombinant Fusion ProteinsBacterial Outer Membrane ProteinsdsbA protein, E coliEndodeoxyribonucleasesEndoribonucleasesEscherichia coli ProteinsImmunoglobulin Fab FragmentsOMPA outer membrane proteinsProtein Disulfide-IsomerasesProtein Sorting SignalsRecombinant Fusion ProteinsSerratia marcescens nucleaseAutonucleolyticBioprocessFab’ fragmentLeakageNucleasePeriplasm

Identifiers

PMID28875244
PMCPMC5674116
OpenAlexW2751315287

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.