Evidence map›Paper›PMID 28874737›Full record

ArticleScientific reports2017

Genome Analysis of Staphylococcus capitis TE8 Reveals Repertoire of Antimicrobial Peptides and Adaptation Strategies for Growth on Human Skin.

Rohit Kumar, Pramod Kumar Jangir, Jhumki Das, Bhupesh Taneja, Rakesh Sharma

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Clinical microbiology reviews · 2024
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  3. Phenotypic Variation inAntibiotics (Basel, Switzerland) · 2024
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  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Antibiotics (Basel, Switzerland) · 2023
    Review
  10. Review
  11. Article
  12. Article
  13. Phenol-soluble modulins PSMα3 and PSMβ2 form nanotubes that are cross-α amyloids.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Comparative genomics ofFrontiers in microbiology · 2022
    Article
  15. Article
  16. The microbiome-shaping roles of bacteriocins.Nature reviews. Microbiology · 2021
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Rohit KumarCSIR-Institute of Genomics and Integrative Biology, Council of Scientific and Industrial Research (CSIR), New Delhi, India.
Pramod Kumar JangirCSIR-Institute of Genomics and Integrative Biology, Council of Scientific and Industrial Research (CSIR), New Delhi, India.
Jhumki DasCSIR-Institute of Genomics and Integrative Biology, Council of Scientific and Industrial Research (CSIR), New Delhi, India.
Bhupesh TanejaCSIR-Institute of Genomics and Integrative Biology, Council of Scientific and Industrial Research (CSIR), New Delhi, India. btaneja@igib.res.in.
Rakesh SharmaCSIR-Institute of Genomics and Integrative Biology, Council of Scientific and Industrial Research (CSIR), New Delhi, India. rsharma@igib.res.in.
Council of Scientific and Industrial Research · INAcademy of Scientific and Innovative Research · INInstitute of Genomics and Integrative Biology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Staphylococcus capitis TE8 was isolated from skin surface of a healthy human foot, and exhibited a strong antibacterial activity against Gram-positive bacteria, including Staphylococcus aureus. Whole genome sequence of S. capitis TE8 was obtained by shotgun and paired-end pyrosequencing with a coverage of 109-fold. The draft genome contains 2,516,639 bp in 8 scaffolds with 209 total contigs. The genome contains 2319 protein coding sequences, 58 tRNA and 3 rRNA. Genome sequence analysis revealed 4 distinct gene loci with the ability to encode antimicrobial peptides: (i) an epidermicin gene cluster; (ii) a gallidermin gene cluster; (iii) a gene cluster encoding six phenol soluble modulin (PSM) β-type peptides (PSMβ1-β6) and (iv) an additional gene that belonged to PSMβ family and encoded a 44 residues long peptide, HTP2388. Synthetic peptides with sequence identical to seven PSMβ-like peptides i.e. PSMβ1-β6 and peptide HTP2388 showed antibacterial activity. Genome sequence also revealed genes for adhesins, intracellular adhesins, osmoadaptation, oxidative and acid stress tolerance possibly responsible for initial attachment, colonization and survival of S. capitis TE8 on human skin. Comparative genome analysis revealed presence of a gamut of genes in S. capitis strains in comparison to Staphylococcus epidermidis and Staphylococcus caprae indicating towards their possible role in better adaptation and survival on human skin.

Indexed as

Genome, BacterialGenomicsAdaptation, BiologicalAmino Acid SequenceAntibiosisAntimicrobial Cationic PeptidesComputational BiologyGene OrderHumansMicrobial Sensitivity TestsMultigene FamilyPhylogenyRNA, Ribosomal, 16SSkinStaphylococcal Skin InfectionsStaphylococcus capitisAntimicrobial Cationic PeptidesRNA, Ribosomal, 16S

Identifiers

PMID28874737
PMCPMC5585272
OpenAlexW2751627875

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.