Evidence map›Paper›PMID 28874663›Full record

ArticleNature communications2017

Biosynthesis of the nosiheptide indole side ring centers on a cryptic carrier protein NosJ.

Wei Ding, Wenjuan Ji, Yujie Wu, Runze Wu, Wan-Qiu Liu, Tianlu Mo, Junfeng Zhao, Xiaoyan Ma, Wei Zhang, Ping Xu and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Functional Diversity of HemN-like Proteins.ACS bio & med chem Au · 2022
    Review
  4. Whole genome sequencing ofBiotechnology reports (Amsterdam, Netherlands) · 2021
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Wei DingJiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Synthetic Innovation Center for Coastal Bioagriculture, Yancheng Teachers University, Yancheng, 224002, China.
Wenjuan JiDepartment of Chemistry, Fudan University, Shanghai, 200433, China.
Yujie WuDepartment of Chemistry, Fudan University, Shanghai, 200433, China.
Runze WuDepartment of Chemistry, Fudan University, Shanghai, 200433, China.
Wan-Qiu LiuDepartment of Chemistry, Fudan University, Shanghai, 200433, China.
Tianlu MoDepartment of Chemistry, Fudan University, Shanghai, 200433, China.
Junfeng ZhaoDepartment of Chemistry, Fudan University, Shanghai, 200433, China.
Xiaoyan MaDepartment of Chemistry, Fudan University, Shanghai, 200433, China.
Wei ZhangKey Laboratory of Extreme Environmental Microbial Resources and Engineering, Northwest Institute of Eco-environment and Resource, Chinese Academy of Sciences, Lanzhou, 730000, China.
Ping XuState Key Laboratory of Proteomics, National Center for Protein Sciences, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing, 102206, China.
Zixin DengKey Laboratory of Combinatory Biosynthesis and Drug Discovery (Ministry of Education), School of Pharmaceutical Sciences, Wuhan University, Wuhan, 430071, China.
Boping TangJiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Synthetic Innovation Center for Coastal Bioagriculture, Yancheng Teachers University, Yancheng, 224002, China. boptang@163.com.
Yi YuKey Laboratory of Combinatory Biosynthesis and Drug Discovery (Ministry of Education), School of Pharmaceutical Sciences, Wuhan University, Wuhan, 430071, China. yu_yi@whu.edu.cn.
Qi ZhangDepartment of Chemistry, Fudan University, Shanghai, 200433, China. qizhang@sioc.ac.cn.ORCID http://orcid.org/0000-0002-8135-2221
Fudan University · CNChinese Academy of Sciences · CNWuhan University · CNBeijing Proteome Research Center · CNYancheng Teachers University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nosiheptide is a prototypal thiopeptide antibiotic, containing an indole side ring in addition to its thiopeptide-characteristic macrocylic scaffold. This indole ring is derived from 3-methyl-2-indolic acid (MIA), a product of the radical S-adenosylmethionine enzyme NosL, but how MIA is incorporated into nosiheptide biosynthesis remains to be investigated. Here we report functional dissection of a series of enzymes involved in nosiheptide biosynthesis. We show NosI activates MIA and transfers it to the phosphopantetheinyl arm of a carrier protein NosJ. NosN then acts on the NosJ-bound MIA and installs a methyl group on the indole C4, and the resulting dimethylindolyl moiety is released from NosJ by a hydrolase-like enzyme NosK. Surface plasmon resonance analysis show that the molecular complex of NosJ with NosN is much more stable than those with other enzymes, revealing an elegant biosynthetic strategy in which the reaction flux is controlled by protein-protein interactions with different binding affinities.Thiopeptides such as nosiheptide are clinically-interesting antimicrobial natural products. Here the authors show the functional dissection of a series of enzymes involved in nosiheptide biosynthesis, revealing a unique biosynthetic pathway that centers on a previously-unknown carrier protein.

Indexed as

Biosynthetic PathwaysBacterial ProteinsCarrier ProteinsIndolesKineticsProtein BindingStreptomycesSurface Plasmon ResonanceThiazolesBacterial ProteinsCarrier ProteinsindoleIndolesnosiheptideThiazoles

Identifiers

PMID28874663
PMCPMC5585349
OpenAlexW2753630644

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.