Evidence map›Paper›PMID 28873961›Full record

ArticleGigaScience2017

Transcriptome analysis of the response of Burmese python to digestion.

Jinjie Duan, Kristian Wejse Sanggaard, Leif Schauser, Sanne Enok Lauridsen, Jan J Enghild, Mikkel Heide Schierup, Tobias Wang

Open access · goldAbstract read
In one paragraph

Article in GigaScience, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Postprandial cardiac hypertrophy is sustained by mechanics, epigenetic, and metabolic reprogramming in pythons.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Convergent evolution of toxin resistance in animals.Biological reviews of the Cambridge Philosophical Society · 2022
    Review
  6. Review
  7. Article
  8. Article
  9. In-depth transcriptome reveals the potential biotechnological application ofThe journal of venomous animals and toxins including tropical diseases · 2020
    Article
  10. Reptiles as a Model System to Study Heart Development.Cold Spring Harbor perspectives in biology · 2020
    Review
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jinjie DuanBioinformatics Research Center, Aarhus University, C.F. Moellers Alle 8, Aarhus C, Denmark.
Kristian Wejse SanggaardDepartment of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10C, Aarhus C, Denmark.
Leif SchauserQIAGEN Aarhus, Silkeborgvej 2, Aarhus C, Denmark.
Sanne Enok LauridsenDepartment of Bioscience, Aarhus University, Ny Munkegade 116, Aarhus C, Denmark.
Jan J EnghildDepartment of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10C, Aarhus C, Denmark.
Mikkel Heide SchierupBioinformatics Research Center, Aarhus University, C.F. Moellers Alle 8, Aarhus C, Denmark.
Tobias WangDepartment of Bioscience, Aarhus University, Ny Munkegade 116, Aarhus C, Denmark.
Aarhus University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Exceptional and extreme feeding behaviour makes the Burmese python (Python bivittatus) an interesting model to study physiological remodelling and metabolic adaptation in response to refeeding after prolonged starvation. In this study, we used transcriptome sequencing of 5 visceral organs during fasting as well as 24 hours and 48 hours after ingestion of a large meal to unravel the postprandial changes in Burmese pythons. We first used the pooled data to perform a de novo assembly of the transcriptome and supplemented this with a proteomic survey of enzymes in the plasma and gastric fluid. We constructed a high-quality transcriptome with 34 423 transcripts, of which 19 713 (57%) were annotated. Among highly expressed genes (fragments per kilo base per million sequenced reads > 100 in 1 tissue), we found that the transition from fasting to digestion was associated with differential expression of 43 genes in the heart, 206 genes in the liver, 114 genes in the stomach, 89 genes in the pancreas, and 158 genes in the intestine. We interrogated the function of these genes to test previous hypotheses on the response to feeding. We also used the transcriptome to identify 314 secreted proteins in the gastric fluid of the python. Digestion was associated with an upregulation of genes related to metabolic processes, and translational changes therefore appear to support the postprandial rise in metabolism. We identify stomach-related proteins from a digesting individual and demonstrate that the sensitivity of modern liquid chromatography/tandem mass spectrometry equipment allows the identification of gastric juice proteins that are present during digestion.

Indexed as

Gene Expression ProfilingTranscriptomeAnimalsBoidaeCluster AnalysisComputational BiologyDatabases, GeneticDigestionGastric JuiceGene OntologyOrgan SpecificityPostprandial PeriodPrincipal Component AnalysisProteomeProteomicsWorkflowProteomeBurmese pythondigestionpathwayproteometissue expressiontranscriptome

Identifiers

PMID28873961
PMCPMC5597892
OpenAlexW2735466238

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.