Evidence map›Paper›PMID 28872766›Full record

ArticleInsect science2019

HT-SuperSAGE of the gut tissue of a Vip3Aa-resistant Heliothis virescens (Lepidoptera: Noctuidae) strain provides insights into the basis of resistance.

Camilo Ayra-Pardo, Maria E Ochagavía, Ben Raymond, Asim Gulzar, Lianet Rodríguez-Cabrera, Claudia Rodríguez de la Noval, Ivis Morán Bertot, Ryohei Terauchi, Kentaro Yoshida, Hideo Matsumura and 4 more

Open access · hybridAbstract readValidation Study
In one paragraph

Article in Insect science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Response Mechanisms of Invertebrates toMicrobiology and molecular biology reviews : MMBR · 2021
    Review
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 4 countries.

Camilo Ayra-PardoPlant Division Centre for Genetic Engineering and Biotechnology (CIGB), Havana, Cuba.
Maria E OchagavíaPlant Division Centre for Genetic Engineering and Biotechnology (CIGB), Havana, Cuba.
Ben RaymondDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, Berkshire, UK.
Asim GulzarDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, Berkshire, UK.
Lianet Rodríguez-CabreraPlant Division Centre for Genetic Engineering and Biotechnology (CIGB), Havana, Cuba.ORCID http://orcid.org/0000-0002-6740-1699
Claudia Rodríguez de la NovalPlant Division Centre for Genetic Engineering and Biotechnology (CIGB), Havana, Cuba.
Ivis Morán BertotPlant Division Centre for Genetic Engineering and Biotechnology (CIGB), Havana, Cuba.
Ryohei TerauchiGenetics and Genomics Research Group, Iwate Biotechnology Research Center, Kitakami, Japan.
Kentaro YoshidaGenetics and Genomics Research Group, Iwate Biotechnology Research Center, Kitakami, Japan.
Hideo MatsumuraGenetics and Genomics Research Group, Iwate Biotechnology Research Center, Kitakami, Japan.
Pilar Téllez RodríguezPlant Division Centre for Genetic Engineering and Biotechnology (CIGB), Havana, Cuba.
Daily Hernández HernándezPlant Division Centre for Genetic Engineering and Biotechnology (CIGB), Havana, Cuba.
Orlando Borrás-HidalgoPlant Division Centre for Genetic Engineering and Biotechnology (CIGB), Havana, Cuba.
Denis J WrightDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, Berkshire, UK.
Centro de Ingeniería Genética y Biotecnología · CUIwate Biotechnology Research Center · JPImperial College London · GBPir Mehr Ali Shah Arid Agriculture University · PKShinshu University · JPUniversity of Exeter · GB

Funding

Cuban biotechnological group BioCubaFarma 3031-243NERC
6 · The paper itself

Abstract

Multitoxin Bt-crops expressing insecticidal toxins with different modes of action, for example, Cry and Vip, are expected to improve resistance management in target pests. While Cry1A resistance has been relatively well characterized in some insect species, this is not the case for Vip3A, for which no mechanism of resistance has yet been identified. Here we applied HT-SuperSAGE to analyze the transcriptome of the gut tissue of tobacco budworm Heliothis virescens (F.) laboratory-selected for Vip3Aa resistance. From a total of 1 324 252 sequence reads, 5 895 126-bp tags were obtained representing 17 751 nonsingleton unique transcripts (UniTags) from genetically similar Vip3Aa-resistant (Vip-Sel) and susceptible control (Vip-Unsel) strains. Differential expression was significant (≥2.5 fold or ≤0.4; P < 0.05) for 1989 sequences (11.2% of total UniTags), where 420 represented overexpressed (OE) and 1569 underexpressed (UE) genes in Vip-Sel. BLASTN searches mapped 419 UniTags to H. virescens sequence contigs, of which, 416 (106 OE and 310 UE) were unambiguously annotated to proteins in NCBI nonredundant protein databases. Gene Ontology distributed 345 of annotated UniTags in 14 functional categories with metabolism (including serine-type hydrolases) and translation/ribosome biogenesis being the most prevalent. A UniTag homologous to a particular member of the REsponse to PAThogen (REPAT) family was found among most overexpressed, while UniTags related to the putative Vip3Aa-binding ribosomal protein S2 (RpS2) were underexpressed. qRT-PCR of a subset of UniTags validated the HT-SuperSAGE data. This study is the first providing lepidopteran gut transcriptome associated with Vip3Aa resistance and a foundation for future attempts to elucidate the resistance mechanism.

Indexed as

Bacterial ProteinsTranscriptomeAnimalsGene LibraryInsecticide ResistanceLarvaMothsRibosomal ProteinsSerine ProteasesBacterial ProteinsRibosomal ProteinsSerine ProteasesVip3A protein, Bacillus thuringiensisBt resistanceHeliothis virescensHT-SuperSAGEtranscriptomicsVip3Aa

Identifiers

PMID28872766
PMCPMC6849831
OpenAlexW2752628196

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.