Evidence map›Paper›PMID 28872219›Full record

ArticleMicrobiologyOpen2017

Characterization of sediment bacterial communities in plain lakes with different trophic statuses.

Wei Huang, Xing Chen, Xia Jiang, Binghui Zheng

Abstract read
In one paragraph

Article in MicrobiologyOpen, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Wei HuangState Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, China.ORCID 0000-0003-4069-7343
Xing ChenState Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, China.
Xia JiangState Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, China.
Binghui ZhengState Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sediment microbial communities play an important role in lake trophic status. This study determined millions of Illumina reads (16S rRNA gene amplicons) to compare the bacterial communities in moderately eutrophic, lightly eutrophic, and moderately trophic regions using a technically consistent approach. The results indicated that the sediments from moderately eutrophic and trophic lake had the higher bacterial diversity than lightly eutrophic lake. Proteobacteria was the most abundant phylum (22.7%-86.2%) across samples from three regions. The sediments from moderately eutrophic region were enriched with Chloroflexi and Nitrospirae. Alphaproteobacteria, Gammaproteobacteria, and Bacteroidetes were enriched in the sediments from lightly eutrophic lake. The sediments from moderately trophic lake contained a high abundance of Acidobacteria and Deltaproteobacteria because of the low pH of the sediments in this lake. In moderately eutrophic region, Nitrospira held an absolute predominance, while Lysobacter and Flavobacterium were the most predominant genera in lightly eutrophic region. Temperature was the main factor influencing the bacterial community in the three lakes. The bacterial communities in the sediment samples obtained from moderately eutrophic lake were associated with nutrient concentration, whereas organic matter and total nitrogen contents mainly influenced the bacterial communities in sediments obtained from lightly eutrophic lake and moderately trophic lake, respectively.

Indexed as

Environmental MicrobiologyBacteriaBiodiversityChinaCluster AnalysisGeologic SedimentsHigh-Throughput Nucleotide SequencingLakesPhylogenyPhylogeographyRNA, Ribosomal, 16SRNA, Ribosomal, 16SBacterial communitylakesedimentsequencetrophic status

Identifiers

PMID28872219
PMCPMC5635163

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.