ArticlePlant biotechnology journal2018
Assembly and analysis of a qingke reference genome demonstrate its close genetic relation to modern cultivated barley.
Article in Plant biotechnology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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Who cites it
35 citing papers in PubMed.
- Genomic insights into the improvement of Chinese fir from ancient domestication continuum to modern breeding.Nature communications · 2026Article
- Qingke flavor characteristics and formation mechanisms: volatile metabolites and their changes from raw material to diverse product.Frontiers in nutrition · 2026Review
- Deciphering drought response mechanism in Tibetan qingke through comprehensive transcriptomic and physiological analysis.Frontiers in plant science · 2025Article
- Fine mapping and candidate gene mining of QSc/Sl.cib-7H for spike compactness and length and its pleiotropic effects on yield-related traits in barley (Hordeum vulgare L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- High resolution mapping of a novel non-transgressive hybrid susceptibility locus in barley exploited by P. teres f. maculata.BMC plant biology · 2024Article
- High-quality wild barley genome assemblies and annotation with Nanopore long reads and Hi-C sequencing data.Scientific data · 2023Article
- Genome resequencing and transcriptome profiling reveal molecular evidence of tolerance to water deficit in barley.Journal of advanced research · 2023Article
- Salt Stress-Related Mechanisms in Leaves of the Wild BarleyLife (Basel, Switzerland) · 2023Article
- BarleyExpDB: an integrative gene expression database for barley.BMC plant biology · 2023Article
- How Does Stomatal Density and Residual Transpiration Contribute to Osmotic Stress Tolerance?Plants (Basel, Switzerland) · 2023Review
- Genome-wide association analysis provides insights into the genetic basis of photosynthetic responses to low-temperature stress in spring barley.Frontiers in plant science · 2023Article
- Genome diversity and highland-adaptative variation in Tibet barley landrace population of China.Frontiers in plant science · 2023Article
- Triticeae crop genome biology: an endless frontier.Frontiers in plant science · 2023Review
- Construction of a high-resolution genetic map and identification of single nucleotide polymorphism markers relevant to flower stalk height in onion.Frontiers in plant science · 2023Article
- Discovery of DNA polymorphisms via genome-resequencing and development of molecular markers between two barley cultivars.Plant cell reports · 2022Article
- Vacuolar H+-pyrophosphatase HVP10 enhances salt tolerance via promoting Na+ translocation into root vacuoles.Plant physiology · 2022Article
- Multi-Omics Analysis Reveals the Mechanism Underlying the Edaphic Adaptation in Wild Barley at Evolution Slope (Tabigha).Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2021Article
- Genome-wide identification and expression profile under abiotic stress of the barley non-specific lipid transfer protein gene family and its Qingke Orthologues.BMC genomics · 2021Article
- Long-read sequence assembly: a technical evaluation in barley.The Plant cell · 2021Article
- Identifying barley pan-genome sequence anchors using genetic mapping and machine learning.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
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9 authors.
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Abstract
Qingke, the local name of hulless barley in the Tibetan Plateau, is a staple food for Tibetans. The availability of its reference genome sequences could be useful for studies on breeding and molecular evolution. Taking advantage of the third-generation sequencer (PacBio), we de novo assembled a 4.84-Gb genome sequence of qingke, cv. Zangqing320 and anchored a 4.59-Gb sequence to seven chromosomes. Of the 46,787 annotated 'high-confidence' genes, 31 564 were validated by RNA-sequencing data of 39 wild and cultivated barley genotypes with wide genetic diversity, and the results were also confirmed by nonredundant protein database from NCBI. As some gaps in the reference genome of Morex were covered in the reference genome of Zangqing320 by PacBio reads, we believe that the Zangqing320 genome provides the useful supplements for the Morex genome. Using the qingke genome as a reference, we conducted a genome comparison, revealing a close genetic relationship between a hulled barley (cv. Morex) and a hulless barley (cv. Zangqing320), which is strongly supported by the low-diversity regions in the two genomes. Considering the origin of Morex from its breeding pedigree, we then demonstrated a close genomic relationship between modern cultivated barley and qingke. Given this genomic relationship and the large genetic diversity between qingke and modern cultivated barley, we propose that qingke could provide elite genes for barley improvement.
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