Evidence map›Paper›PMID 28871137›Full record

ArticleLeukemia2018

C-terminal BRE overexpression in 11q23-rearranged and t(8;16) acute myeloid leukemia is caused by intragenic transcription initiation.

A E Marneth, K H M Prange, A S A Al Hinai, S M Bergevoet, N Tesi, E M Janssen-Megens, B Kim, N Sharifi, M L Yaspo, J Kuster and 13 more

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In one paragraph

Article in Leukemia, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 2 countries.

A E MarnethDepartment of Laboratory Medicine, Laboratory of Hematology, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud University Medical Center, Nijmegen, The Netherlands.
K H M PrangeDepartment of Molecular Biology, Faculty of Science, RIMLS, Radboud University, Nijmegen, The Netherlands.
A S A Al HinaiDepartment of Hematology, Erasmus University Medical Center, Rotterdam, The Netherlands.
S M BergevoetDepartment of Laboratory Medicine, Laboratory of Hematology, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud University Medical Center, Nijmegen, The Netherlands.
N TesiDepartment of Molecular Biology, Faculty of Science, RIMLS, Radboud University, Nijmegen, The Netherlands.
E M Janssen-MegensDepartment of Molecular Biology, Faculty of Science, RIMLS, Radboud University, Nijmegen, The Netherlands.
B KimDepartment of Molecular Biology, Faculty of Science, RIMLS, Radboud University, Nijmegen, The Netherlands.
N SharifiDepartment of Molecular Biology, Faculty of Science, RIMLS, Radboud University, Nijmegen, The Netherlands.
M L YaspoMax Planck Institute for Molecular Genetics, Berlin, Germany.
J KusterDepartment of Molecular Biology, Faculty of Science, RIMLS, Radboud University, Nijmegen, The Netherlands.
M A SandersDepartment of Hematology, Erasmus University Medical Center, Rotterdam, The Netherlands.
E C G StoetmanDepartment of Hematology, Erasmus University Medical Center, Rotterdam, The Netherlands.
J KnijnenburgDepartment of Clinical Genetics, Erasmus University Medical Center, Rotterdam, The Netherlands.
T C J M Arentsen-PetersPediatric Oncology/Hematology, Erasmus University Medical Center-Sophia Children's Hospital, Rotterdam, The Netherlands.
C M ZwaanPediatric Oncology/Hematology, Erasmus University Medical Center-Sophia Children's Hospital, Rotterdam, The Netherlands.
H G StunnenbergDepartment of Molecular Biology, Faculty of Science, RIMLS, Radboud University, Nijmegen, The Netherlands.
M M van den Heuvel-EibrinkPediatric Oncology/Hematology, Erasmus University Medical Center-Sophia Children's Hospital, Rotterdam, The Netherlands.
T HaferlachMLL Munich Leukemia Laboratory, Munich, Germany.
M FornerodPediatric Oncology/Hematology, Erasmus University Medical Center-Sophia Children's Hospital, Rotterdam, The Netherlands.
J H JansenDepartment of Laboratory Medicine, Laboratory of Hematology, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud University Medical Center, Nijmegen, The Netherlands.
P J M ValkDepartment of Hematology, Erasmus University Medical Center, Rotterdam, The Netherlands.
B A van der ReijdenDepartment of Laboratory Medicine, Laboratory of Hematology, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud University Medical Center, Nijmegen, The Netherlands.
J H A MartensDepartment of Molecular Biology, Faculty of Science, RIMLS, Radboud University, Nijmegen, The Netherlands.
Erasmus MC · NLRadboud Institute for Molecular Life Sciences · NLRadboud University Nijmegen · NLRadboud University Medical Center · NLMax Planck Institute for Molecular Genetics · DEMunich Leukemia Laboratory (Germany) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Overexpression of the BRE (brain and reproductive organ-expressed) gene defines a distinct pediatric and adult acute myeloid leukemia (AML) subgroup. Here we identify a promoter enriched for active chromatin marks in BRE intron 4 causing strong biallelic expression of a previously unknown C-terminal BRE transcript. This transcript starts with BRE intron 4 sequences spliced to exon 5 and downstream sequences, and if translated might code for an N terminally truncated BRE protein. Remarkably, the new BRE transcript was highly expressed in over 50% of 11q23/KMT2A (lysine methyl transferase 2A)-rearranged and t(8;16)/KAT6A-CREBBP cases, while it was virtually absent from other AML subsets and normal tissues. In gene reporter assays, the leukemia-specific fusion protein KMT2A-MLLT3 transactivated the intragenic BRE promoter. Further epigenome analyses revealed 97 additional intragenic promoter marks frequently bound by KMT2A in AML with C-terminal BRE expression. The corresponding genes may be part of a context-dependent KMT2A-MLLT3-driven oncogenic program, because they were higher expressed in this AML subtype compared with other groups. C-terminal BRE might be an important contributor to this program because in a case with relapsed AML, we observed an ins(11;2) fusing CHORDC1 to BRE at the region where intragenic transcription starts in KMT2A-rearranged and KAT6A-CREBBP AML.

Indexed as

Gene RearrangementTranscriptional ActivationTranslocation, GeneticCell LineChromosomes, Human, Pair 11Chromosomes, Human, Pair 16Epigenesis, GeneticExonsGene Expression Regulation, LeukemicHistone-Lysine N-MethyltransferaseHistonesHumansIntronsLeukemia, Myeloid, AcuteMyeloid-Lymphoid Leukemia ProteinNerve Tissue ProteinsBABAM2 protein, humanHistone-Lysine N-MethyltransferaseHistonesKMT2A protein, humanMLLT3 protein, humanMyeloid-Lymphoid Leukemia ProteinNerve Tissue ProteinsNuclear Proteins

Identifiers

PMID28871137
OpenAlexW2753355913

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.