Evidence map›Paper›PMID 28871081›Full record

ArticleNature communications2017

Dynamic plasticity in phototransduction regulates seasonal changes in color perception.

Tsuyoshi Shimmura, Tomoya Nakayama, Ai Shinomiya, Shoji Fukamachi, Masaki Yasugi, Eiji Watanabe, Takayuki Shimo, Takumi Senga, Toshiya Nishimura, Minoru Tanaka and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 85 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. DNA methylation site loss for plasticity-led novel trait genetic fixation.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  8. Review
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  12. A transcriptional program underlying the circannual rhythms of gonadal development in medaka.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
  14. Knockout ofInternational journal of molecular sciences · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Characterization ofFrontiers in physiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Tsuyoshi ShimmuraDivision of Seasonal Biology, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Aichi, 444-8585, Japan.
Tomoya NakayamaDivision of Seasonal Biology, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Aichi, 444-8585, Japan.ORCID http://orcid.org/0000-0003-4175-3167
Ai ShinomiyaDivision of Seasonal Biology, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Aichi, 444-8585, Japan.
Shoji FukamachiDepartment of Chemical and Biological Sciences, Japan Women's University, Bunkyo-ku, Tokyo, 112-8681, Japan.
Masaki YasugiLaboratory of Neurophysiology, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Aichi, 444-8585, Japan.
Eiji WatanabeDepartment of Basic Biology, The Graduate University for Advanced Studies (SOKENDAI), Hayama, 240-0193, Japan.
Takayuki ShimoDivision of Seasonal Biology, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Aichi, 444-8585, Japan.
Takumi SengaDivision of Seasonal Biology, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Aichi, 444-8585, Japan.
Toshiya NishimuraLaboratory of Molecular Genetics for Reproduction, National Institute for Basic Biology, Okazaki, Aichi, 444-8787, Japan.
Minoru TanakaDepartment of Basic Biology, The Graduate University for Advanced Studies (SOKENDAI), Hayama, 240-0193, Japan.
Yasuhiro KameiDepartment of Basic Biology, The Graduate University for Advanced Studies (SOKENDAI), Hayama, 240-0193, Japan.ORCID http://orcid.org/0000-0001-6382-1365
Kiyoshi NaruseDepartment of Basic Biology, The Graduate University for Advanced Studies (SOKENDAI), Hayama, 240-0193, Japan.ORCID http://orcid.org/0000-0001-9185-3495
Takashi YoshimuraDivision of Seasonal Biology, National Institute for Basic Biology, National Institutes of Natural Sciences, Okazaki, Aichi, 444-8585, Japan. takashiy@nibb.ac.jp.ORCID http://orcid.org/0000-0001-7018-9652
National Institute for Basic Biology · JPNational Institutes of Natural Sciences · JPJapan Women's University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To cope with seasonal changes in the environment, organisms adapt their physiology and behavior. Although color perception varies among seasons, the underlying molecular basis and its physiological significance remain unclear. Here we show that dynamic plasticity in phototransduction regulates seasonal changes in color perception in medaka fish. Medaka are active and exhibit clear phototaxis in conditions simulating summer, but remain at the bottom of the tank and fail to exhibit phototaxis in conditions simulating winter. Mate preference tests using virtual fish created with computer graphics demonstrate that medaka are more attracted to orange-red-colored model fish in summer than in winter. Transcriptome analysis of the eye reveals dynamic seasonal changes in the expression of genes encoding photopigments and their downstream pathways. Behavioral analysis of photopigment-null fish shows significant differences from wild type, suggesting that plasticity in color perception is crucial for the emergence of seasonally regulated behaviors.Animal coloration and behavior can change seasonally, but it is unclear if visual sensitivity to color shifts as well. Here, Shimmura et al. show that medaka undergo seasonal behavioral change accompanied by altered expression of opsin genes, resulting in reduced visual sensitivity to mates during winter-like conditions.

Indexed as

Adaptation, PhysiologicalSeasonsVision, OcularAnimalsColor PerceptionFemaleGene Expression RegulationMaleMating Preference, AnimalNeuronal PlasticityOpsinsOryziasPhenotypePhotoperiodPhototaxisOpsins

Identifiers

PMID28871081
PMCPMC5583187
OpenAlexW2751000025

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.