Evidence map›Paper›PMID 28870457›Full record

ArticleFungal genetics and biology : FG & B2017

A fluorogenic C. neoformans reporter strain with a robust expression of m-cherry expressed from a safe haven site in the genome.

Rajendra Upadhya, Woei C Lam, Brian T Maybruck, Maureen J Donlin, Andrew L Chang, Sarah Kayode, Kate L Ormerod, James A Fraser, Tamara L Doering, Jennifer K Lodge

Open access · greenAbstract readValidation Study
In one paragraph

Article in Fungal genetics and biology : FG & B, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 75 citations in OpenAlex.

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  15. Ergosterol Is Critical for Sporogenesis inJournal of fungi (Basel, Switzerland) · 2024
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  16. Aneuploidy underlies brefeldin A-induced antifungal drug resistance inFrontiers in cellular and infection microbiology · 2024
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  18. Immune evasion byFrontiers in immunology · 2024
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  20. Vaccination with aInfection and immunity · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Rajendra UpadhyaDepartment of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA.
Woei C LamDepartment of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA.
Brian T MaybruckDepartment of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA.
Maureen J DonlinEdward A. Doisy Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO, USA.
Andrew L ChangDepartment of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA.
Sarah KayodeDepartment of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA.
Kate L OrmerodAustralian Infectious Diseases Research Centre and School of Chemistry& Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia.
James A FraserAustralian Infectious Diseases Research Centre and School of Chemistry& Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia.
Tamara L DoeringDepartment of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA.
Jennifer K LodgeDepartment of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA. Electronic address: lodgejk@wustl.edu.
Washington University in St. Louis · USUniversity of Queensland · AUSaint Louis University · US

Funding

Preclinical studies of a Cryptococcus vaccine for AIDS patientsR01AI125045 · NIAID · WASHINGTON UNIVERSITY · PI LEVITZ, STUART MICHAEL, LODGE, JENNIFER K. · 2016 to 2025
$7.1M
Chitosan in CryptococcusR01AI072195 · NIAID · WASHINGTON UNIVERSITY · PI LODGE, JENNIFER K. · 2008 to 2018
$3.5M
HOST FACTORS IN CRYPTOCOCCAL PATHOGENESISR01AI102882 · NIAID · WASHINGTON UNIVERSITY · PI DOERING, TAMARA L · 2013 to 2017
$2.2M
NIAID NIH HHS R01 AI072195NIAID NIH HHS R01 AI102882NIAID NIH HHS R01 AI125045
6 · The paper itself

Abstract

C. neoformans is an encapsulated fungal pathogen with defined asexual and sexual life cycles. Due to the availability of genetic and molecular tools for its manipulation, it has become a model organism for studies of fungal pathogens, even though it lacks a reliable system for maintaining DNA fragments as extrachromosomal plasmids. To compensate for this deficiency, we identified a genomic gene-free intergenic region where heterologous DNA could be inserted by homologous recombination without adverse effects on the phenotype of the recipient strain. Since such a site in the C. neoformans genome at a different location has been named previously as "safe haven", we named this locus second safe haven site (SH2). Insertion of DNA into this site in the genome of the KN99 congenic strain pair caused minimal change in the growth of the engineered strain under a variety of in vitro and in vivo conditions. We exploited this 'safe' locus to create a genetically stable highly fluorescent strain expressing mCherry protein (KN99mCH); this strain closely resembled its wild-type parent (KN99α) in growth under a variety of in vitro stress conditions and in the expression of virulence traits. The efficiency of phagocytosis and the proliferation of KN99mCH inside human monocyte-derived macrophages were comparable to those of KN99α, and the engineered strain showed the expected organ dissemination after inoculation, although there was a slight reduction in virulence. The mCherry fluorescence allowed us to measure specific association of cryptococci with leukocytes in the lungs and mediastinal lymph nodes of infected animals and, for the first-time, to assess their live/dead status in vivo. These results highlight the utility of KN99mCH for elucidation of host-pathogen interactions in vivo. Finally, we generated drug-resistant KN99 strains of both mating types that are marked at the SH2 locus with a specific drug resistant gene cassette; these strains will facilitate the generation of mutant strains by mating.

Indexed as

Genome, FungalAnimalsCryptococcosisCryptococcus neoformansDNA, FungalFemaleFluorescenceFungal ProteinsGenes, ReporterGene Transfer TechniquesLuminescent ProteinsMiceMice, Inbred CBAMutagenesis, InsertionalPhenotypeProtein EngineeringDNA, FungalFungal ProteinsLuminescent ProteinsRed Fluorescent ProteinCryptococcus mCherry strainGene complementationHost pathogen interactionKN99mCHPhagocytosisSecond safe haven site

Identifiers

PMID28870457
PMCPMC5681388
OpenAlexW2755140285

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.