ArticleBMC genomics2017
Analysis of the genome sequence of Phomopsis longicolla: a fungal pathogen causing Phomopsis seed decay in soybean.
Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19 citing papers in PubMed, 39 citations in OpenAlex.
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- Multi-year evaluation and release of improved soybean lines for resistance to Phomopsis seed decay.PloS one · 2026Article
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- Highly Repetitive Genome ofInternational journal of molecular sciences · 2024Article
- Complete genome sequence analysis of Pestalotiopsis microspora, a fungal pathogen causing kiwifruit postharvest rots.BMC genomics · 2024Article
- Comparative Analysis of the Mitochondrial Genome Sequences ofJournal of fungi (Basel, Switzerland) · 2024Article
- An Emerging Disease of Chickpea, Basal Stem Rot Caused byPlants (Basel, Switzerland) · 2024Article
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- Evaluation of exotic soybean accessions and their use in developing improved soybean lines with resistance to Phomopsis seed decay.PloS one · 2023Article
- Breeding for disease resistance in soybean: a global perspective.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Review
- Genome Analyses of Two Blueberry Pathogens:Journal of fungi (Basel, Switzerland) · 2022Article
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- Isolation of endophytic fungi with antimicrobial activity from medicinal plant Zanthoxylum simulans Hance.Folia microbiologica · 2021Article
- New Method for Identifying Fungal Kingdom Enzyme Hotspots from Genome Sequences.Journal of fungi (Basel, Switzerland) · 2021Article
- Soybean Stem Canker Caused byFrontiers in plant science · 2019Article
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- The Interactomic Analysis Reveals Pathogenic Protein Networks inFrontiers in genetics · 2018Article
- Development of a seedling inoculation technique for rapid evaluation of soybean for resistance toPlant methods · 2018Article
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Authors and funding
5 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPhomopsis longicolla T. W. Hobbs (syn. Diaporthe longicolla) is a seed-borne fungus causing Phomopsis seed decay in soybean. This disease is one of the most devastating diseases reducing soybean seed quality worldwide. To facilitate investigation of the genomic basis of pathogenicity and to understand the mechanism of the disease development, the genome of an isolate, MSPL10-6, from Mississippi, USA was sequenced, de novo assembled, and analyzed.
resultsThe genome of MSPL 10-6 was estimated to be approximately 62 Mb in size with an overall G + C content of 48.6%. Of 16,597 predicted genes, 9866 genes (59.45%) had significant matches to genes in the NCBI nr database, while 18.01% of them did not link to any gene ontology classification, and 9.64% of genes did not significantly match any known genes. Analysis of the 1221 putative genes that encoded carbohydrate-activated enzymes (CAZys) indicated that 715 genes belong to three classes of CAZy that have a direct role in degrading plant cell walls. A novel fungal ulvan lyase (PL24; EC 4.2.2.-) was identified. Approximately 12.7% of the P. longicolla genome consists of repetitive elements. A total of 510 potentially horizontally transferred genes were identified. They appeared to originate from 22 other fungi, 26 eubacteria and 5 archaebacteria.
conclusionsThe genome of the P. longicolla isolate MSPL10-6 represented the first reported genome sequence in the fungal Diaporthe-Phomopsis complex causing soybean diseases. The genome contained a number of Pfams not described previously. Information obtained from this study enhances our knowledge about this seed-borne pathogen and will facilitate further research on the genomic basis and pathogenicity mechanism of P. longicolla and aids in development of improved strategies for efficient management of Phomopsis seed decay in soybean.
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