Evidence map›Paper›PMID 28869801›Full record

ArticleCancer science2017

Japanese genome-wide association study identifies a significant colorectal cancer susceptibility locus at chromosome 10p14.

Yusuke Takahashi, Keishi Sugimachi, Ken Yamamoto, Atsushi Niida, Teppei Shimamura, Tetsuya Sato, Masahiko Watanabe, Junichi Tanaka, Shinei Kudo, Kenichi Sugihara and 9 more

Open access · goldAbstract read
In one paragraph

Article in Cancer science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Examining the Factors That Affect the Diagnosis of Patients with Positive Fecal Occult Blood Test Results.International journal of environmental research and public health · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 14 institutions in 1 country.

Yusuke TakahashiDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, Japan.
Keishi SugimachiDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, Japan.ORCID http://orcid.org/0000-0001-8768-5388
Ken YamamotoDepartment of Medical Biochemistry, Kurume University, Kurume, Japan.
Atsushi NiidaLaboratory of DNA Information Analysis, Human Genome Center Institute of Medical Science, University of Tokyo, Tokyo, Japan.
Teppei ShimamuraLaboratory of DNA Information Analysis, Human Genome Center Institute of Medical Science, University of Tokyo, Tokyo, Japan.
Tetsuya SatoDivision of Bioinformatics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan.
Masahiko WatanabeDepartment of Surgery, Kitazato University, Sagamihara, Japan.
Junichi TanakaDigestive Disease Center, Northern Yokohama Hospital, Showa University, Yokohama, Japan.
Shinei KudoDigestive Disease Center, Northern Yokohama Hospital, Showa University, Yokohama, Japan.
Kenichi SugiharaDepartment of Surgery, Tokyo Medical and Dental University, Tokyo, Japan.
Kazuo HaseDepartment of Surgery, National Defense University, Tokorozawa, Japan.
Masato KusunokiDepartment of Surgery, Mie University, Tsu, Japan.
Kazutaka YamadaDepartment of Surgery, Takano Hospital, Kumamoto, Japan.
Yasuhiro ShimadaDepartment of Surgery and Digestive Tract Medicine, National Cancer Center, Tokyo, Japan.
Yoshihiro MoriyaDepartment of Surgery and Digestive Tract Medicine, National Cancer Center, Tokyo, Japan.
Yutaka SuzukiDepartment of Medical Genome Sciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan.
Satoru MiyanoLaboratory of DNA Information Analysis, Human Genome Center Institute of Medical Science, University of Tokyo, Tokyo, Japan.
Masaki MoriDepartment of Gastroenterological Surgery, Osaka University, Suita, Japan.
Koshi MimoriDepartment of Surgery, Kyushu University Beppu Hospital, Beppu, Japan.
Tokyo University of Science · JPKyushu University Beppu Hospital · JPNational Cancer Centre Japan · JPShowa University Northern Yokohama Hospital · JPKitasato University · JPKurume University Medical Center · JPKyushu University · JPMie University · JPNational Defense Medical College Hospital · JPNational Hospital Organization Kyushu Cancer Center · JPTakano Hospital · JPThe University of Osaka · JPThe University of Tokyo · JPTokyo Medical and Dental University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome-wide association studies are a powerful tool for searching for disease susceptibility loci. Several studies identifying single nucleotide polymorphisms (SNP) connected intimately to the onset of colorectal cancer (CRC) have been published, but there are few reports of genome-wide association studies in Japan. To identify genetic variants that modify the risk of CRC oncogenesis, especially in the Japanese population, we performed a multi-stage genome-wide association study using a large number of samples: 1846 CRC cases and 2675 controls. We identified 4 SNP (rs7912831, rs4749812, rs7898455 and rs10905453) in chromosome region 10p14 associated with CRC; however, there are no coding or non-coding genes within this region of fairly extensive linkage disequilibrium (a 500-kb block) on 10p14. Our study revealed that the 10p14 locus is significantly correlated with susceptibility to CRC in the Japanese population, in accordance with the results of multiple studies in other races.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyChromosomes, Human, Pair 10Colorectal NeoplasmsFemaleGenotypeHumansJapanLinkage DisequilibriumMaleMiddle AgedPolymorphism, Single Nucleotide10p14Colorectal cancergenome-wide association studyJapanesesingle nucleotide polymorphism

Identifiers

PMID28869801
PMCPMC5665761
OpenAlexW2751116833

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.