Evidence map›Paper›PMID 28869758›Full record

ArticleNature methods2017

Internally ratiometric fluorescent sensors for evaluation of intracellular GTP levels and distribution.

Anna Bianchi-Smiraglia, Mitra S Rana, Colleen E Foley, Leslie M Paul, Brittany C Lipchick, Sudha Moparthy, Kalyana Moparthy, Emily E Fink, Archis Bagati, Edward Hurley and 7 more

Abstract read
In one paragraph

Article in Nature methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
  2. Article
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  4. Review
  5. Article
  6. Article
  7. Review
  8. The bioenergetics of nucleocytoplasmic transport.The Journal of cell biology · 2024
    Article
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  11. Review
  12. Article
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  14. Article
  15. Article
  16. Near-Infrared-II Bioimaging forFrontiers in chemistry · 2021
    Review
  17. Molecular Basis of Mitochondrial and Peroxisomal Division Machineries.International journal of molecular sciences · 2020
    Review
  18. Review
  19. DISC1 Regulates Mitochondrial Trafficking in a Miro1-GTP-Dependent Manner.Frontiers in cell and developmental biology · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Anna Bianchi-SmiragliaDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, New York, USA.
Mitra S RanaDepartment of Biochemistry and Center for Biomedical Neuroscience, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA.
Colleen E FoleyDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, New York, USA.
Leslie M PaulDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, New York, USA.
Brittany C LipchickDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, New York, USA.
Sudha MoparthyDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, New York, USA.
Kalyana MoparthyDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, New York, USA.
Emily E FinkDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, New York, USA.
Archis BagatiDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, New York, USA.
Edward HurleyDepartment of Biochemistry and Neurology, Hunter James Kelly Research Institute, Jacobs School of Medicine and Biomedical Sciences, State University of New York at Buffalo, Buffalo, New York, USA.
Hayley C AffrontiDepartment of Cancer Genetics, Roswell Park Cancer Institute, Buffalo, New York, USA.
Andrei V BakinDepartment of Cancer Genetics, Roswell Park Cancer Institute, Buffalo, New York, USA.
Eugene S KandelDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, New York, USA.
Dominic J SmiragliaDepartment of Cancer Genetics, Roswell Park Cancer Institute, Buffalo, New York, USA.ORCID http://orcid.org/0000-0001-8852-1510
Maria Laura FeltriDepartment of Biochemistry and Neurology, Hunter James Kelly Research Institute, Jacobs School of Medicine and Biomedical Sciences, State University of New York at Buffalo, Buffalo, New York, USA.
Rui SousaDepartment of Biochemistry and Center for Biomedical Neuroscience, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA.ORCID http://orcid.org/0000-0003-4314-121X
Mikhail A NikiforovDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, New York, USA.ORCID http://orcid.org/0000-0001-7868-0518
Roswell Park Comprehensive Cancer Center · USThe University of Texas Health Science Center at San Antonio · USUniversity at Buffalo, State University of New York · US

Funding

Oncogene c-Myc-dependent pathways in cutaneous melanoma03R01CA120244 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NIKIFOROV, MIKHAIL · 2007 to 2016
$3.3M
Leveraging the methionine salvage pathway as a novel therapy for prostate cancer.R01CA197996 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI SMIRAGLIA, DOMINIC JAMES · 2016 to 2020
$2.1M
KLF9-TXNRD2 axis in melanoma progression and metastasisR01CA190533 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI NIKIFOROV, MIKHAIL · 2015 to 2019
$2.0M
KLF9-dependent pathways in multiple myeloma drug resistanceR01CA193981 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI NIKIFOROV, MIKHAIL · 2016 to 2020
$1.9M
Chaperone Mechanisms in Clathrin Mediated Neuronal Vesicle TraffickingR01GM118933 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LAFER, EILEEN M., SOUSA, RUI J. · 2016 to 2019
$1.7M
Development of imaging reagents to monitor GTP levels and GTP/GDP ratios in vivoR21CA151128 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI SOUSA, RUI J. · 2010 to 2011
$349k
GTP Metabolism Controls Tumor InvasionF32CA189622 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI BIANCHI-SMIRAGLIA, ANNA · 2015 to 2017
$173k
Leveraging polyamine metabolic stress as a novel therapy for prostate cancerF99CA212455 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI AFFRONTI, HAYLEY · 2016 to 2017
$60k
NCI NIH HHS F32 CA189622NCI NIH HHS F99 CA212455NCI NIH HHS R01 CA120244NCI NIH HHS R01 CA190533NCI NIH HHS R01 CA193981NCI NIH HHS R01 CA197996NCI NIH HHS R21 CA151128NIGMS NIH HHS R01 GM118933
6 · The paper itself

Abstract

GTP is a major regulator of multiple cellular processes, but tools for quantitative evaluation of GTP levels in live cells have not been available. We report the development and characterization of genetically encoded GTP sensors, which we constructed by inserting a circularly permuted yellow fluorescent protein (cpYFP) into a region of the bacterial G protein FeoB that undergoes a GTP-driven conformational change. GTP binding to these sensors results in a ratiometric change in their fluorescence, thereby providing an internally normalized response to changes in GTP levels while minimally perturbing those levels. Mutations introduced into FeoB to alter its affinity for GTP created a series of sensors with a wide dynamic range. Critically, in mammalian cells the sensors showed consistent changes in ratiometric signal upon depletion or restoration of GTP pools. We show that these GTP evaluators (GEVALs) are suitable for detection of spatiotemporal changes in GTP levels in living cells and for high-throughput screening of molecules that modulate GTP levels.

Indexed as

Biosensing TechniquesAnimalsBacterial ProteinsCell Line, TumorGuanosine TriphosphateHumansHydrogen-Ion ConcentrationLuminescent ProteinsMutationBacterial ProteinsGuanosine TriphosphateLuminescent Proteinsyellow fluorescent protein, Bacteria

Identifiers

PMID28869758
PMCPMC5636219
OpenAlexW2750963022

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.