Evidence map›Paper›PMID 28869591›Full record

ArticleNature genetics2017

Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis.

John P Kemp, John A Morris, Carolina Medina-Gomez, Vincenzo Forgetta, Nicole M Warrington, Scott E Youlten, Jie Zheng, Celia L Gregson, Elin Grundberg, Katerina Trajanoska and 28 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Nature genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 279 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
279citing papers in PubMed, 11 pooled it
46.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

279 citing papers in PubMed, 11 syntheses or guidelines pooled it, 515 citations in OpenAlex.

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  3. Low Circulating Valine Associate With High Risk of Hip Fractures.The Journal of clinical endocrinology and metabolism · 2023
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219 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors at 15 institutions in 5 countries.

John P KempUniversity of Queensland Diamantina Institute, Translational Research Institute, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0002-9105-2249
John A MorrisCentre for Clinical Epidemiology, Lady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.ORCID http://orcid.org/0000-0003-2769-8202
Carolina Medina-GomezDepartment of Internal Medicine, Erasmus Medical Center, Rotterdam, the Netherlands.ORCID http://orcid.org/0000-0001-7999-5538
Vincenzo ForgettaCentre for Clinical Epidemiology, Lady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.
Nicole M WarringtonUniversity of Queensland Diamantina Institute, Translational Research Institute, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0003-4195-775X
Scott E YoultenGarvan Institute of Medical Research, Sydney, New South Wales, Australia.
Jie ZhengMRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK.
Celia L GregsonMusculoskeletal Research Unit, Department of Translational Health Sciences, University of Bristol, Bristol, UK.ORCID http://orcid.org/0000-0001-6414-0529
Elin GrundbergDepartment of Human Genetics, McGill University, Montréal, Québec, Canada.
Katerina TrajanoskaDepartment of Internal Medicine, Erasmus Medical Center, Rotterdam, the Netherlands.
John G LoganMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.
Andrea S PollardMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.
Penny C SparkesMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.
Elena J GhirardelloMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.
Rebecca AllenMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.
Victoria D LeitchMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.
Natalie C ButterfieldMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.
Davide Komla-EbriMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.
Anne-Tounsia AdoumMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.
Katharine F CurryMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.
Jacqueline K WhiteWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK.
Fiona KussyWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK.
Keelin M GreenlawCentre for Clinical Epidemiology, Lady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.
Changjiang XuDonnelly Center for Cellular and Biomedical Research, University of Toronto, Toronto, Ontario, Canada.
Nicholas C HarveyMRC Lifecourse Epidemiology Unit, University of Southampton, Southampton, UK.
Cyrus CooperMRC Lifecourse Epidemiology Unit, University of Southampton, Southampton, UK.
David J AdamsWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, UK.
Celia M T GreenwoodCentre for Clinical Epidemiology, Lady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.ORCID http://orcid.org/0000-0002-2427-5696
Matthew T MauranoDepartment of Pathology and Institute for Systems Genetics, New York University Langone Medical Center, New York, New York, USA.
Stephen KaptogeDepartment of Public Health and Primary Care, University of Cambridge, Cambridge, UK.
Fernando RivadeneiraDepartment of Internal Medicine, Erasmus Medical Center, Rotterdam, the Netherlands.ORCID http://orcid.org/0000-0001-9435-9441
Jonathan H TobiasMusculoskeletal Research Unit, Department of Translational Health Sciences, University of Bristol, Bristol, UK.
Peter I CroucherGarvan Institute of Medical Research, Sydney, New South Wales, Australia.
Cheryl L Ackert-BicknellCenter for Musculoskeletal Research, Department of Orthopaedics, University of Rochester, Rochester, New York, USA.
J H Duncan BassettMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.ORCID http://orcid.org/0000-0003-0817-0082
Graham R WilliamsMolecular Endocrinology Laboratory, Department of Medicine, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-8555-8219
J Brent RichardsCentre for Clinical Epidemiology, Lady Davis Institute, Jewish General Hospital, McGill University, Montréal, Québec, Canada.ORCID http://orcid.org/0000-0002-3746-9086
David M EvansUniversity of Queensland Diamantina Institute, Translational Research Institute, Brisbane, Queensland, Australia.ORCID http://orcid.org/0000-0003-0663-4621
Imperial College London · GBErasmus MC · NLJewish General Hospital · CATranslational Research Institute · AUUniversity of Bristol · GBWellcome Sanger Institute · GBGarvan Institute of Medical Research · AUUniversity Hospital Southampton NHS Foundation Trust · GBKing's College London · GBMcGill University · CAMcGill University Health Centre · CANYU Langone Health · USUniversity of Cambridge · GBUniversity of Rochester · USUniversity of Toronto · CA

Funding

Co-localizing Quantitative Trait Loci for Bone Mineral Density and HDL in MiceR01AR060234 · NIAMS · UNIVERSITY OF ROCHESTER · PI ACKERT-BICKNELL, CHERYL LYNNE · 2010 to 2014
$1.5M
Genetics of Osteoblast DifferentiationR21AR060981 · NIAMS · JACKSON LABORATORY · PI ACKERT-BICKNELL, CHERYL LYNNE, HIBBS, MATTHEW AARON · 2011 to 2012
$445k
Arthritis Research UK 17702Arthritis Research UK 21231British Heart Foundation RG/08/014/24067British Heart Foundation RG/13/13/30194Department of Health 10/33/04Department of Health HTA/10/33/04Medical Research Council G0400491Medical Research Council MC_QA137853Medical Research Council MC_U147585819Medical Research Council MC_U147585824Medical Research Council MC_U147585827Medical Research Council MC_UP_A620_1014Medical Research Council MC_UU_12011/1Medical Research Council MC_UU_12013/4Medical Research Council MR/L003120/1NIAMS NIH HHS R01 AR060234NIAMS NIH HHS R21 AR060981Versus Arthritis 20000Wellcome Trust 094134Wellcome Trust 101123WILLIAMS
6 · The paper itself

Abstract

Osteoporosis is a common disease diagnosed primarily by measurement of bone mineral density (BMD). We undertook a genome-wide association study (GWAS) in 142,487 individuals from the UK Biobank to identify loci associated with BMD as estimated by quantitative ultrasound of the heel. We identified 307 conditionally independent single-nucleotide polymorphisms (SNPs) that attained genome-wide significance at 203 loci, explaining approximately 12% of the phenotypic variance. These included 153 previously unreported loci, and several rare variants with large effect sizes. To investigate the underlying mechanisms, we undertook (1) bioinformatic, functional genomic annotation and human osteoblast expression studies; (2) gene-function prediction; (3) skeletal phenotyping of 120 knockout mice with deletions of genes adjacent to lead independent SNPs; and (4) analysis of gene expression in mouse osteoblasts, osteocytes and osteoclasts. The results implicate GPC6 as a novel determinant of BMD, and also identify abnormal skeletal phenotypes in knockout mice associated with a further 100 prioritized genes.

Indexed as

Genome-Wide Association StudyPolymorphism, Single NucleotideAnimalsBone DensityCalcaneusDisease Models, AnimalFemaleFemurGene Expression ProfilingGlypicansGrowth DisordersHumansMaleMiceMice, KnockoutMolecular Sequence Annotationglypican 6 protein, mouseGlypicans

Identifiers

PMID28869591
PMCPMC5621629
OpenAlexW2751430583

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.