Evidence map›Paper›PMID 28869500›Full record

ArticleDiagnostics (Basel, Switzerland)2017

Using Naïve Bayesian Analysis to Determine Imaging Characteristics of KRAS Mutations in Metastatic Colon Cancer.

Yash Pershad, Siddharth Govindan, Amy K Hara, Mitesh J Borad, Tanios Bekaii-Saab, Alex Wallace, Hassan Albadawi, Rahmi Oklu

Open access · goldAbstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Radiogenomics in Interventional Oncology.Current oncology reports · 2021
    Review
  5. Review
  6. Review
  7. Article
  8. Liquid Biopsy in Gastrointestinal Cancers.Diagnostics (Basel, Switzerland) · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Yash PershadDepartment of Radiology, Division of Vascular & Interventional Radiology, Mayo Clinic, Phoenix, AZ 85054, USA. pershad.yash@mayo.edu.
Siddharth GovindanDepartment of Radiology, Massachusetts General Hospital, Boston, MA 02114, USA. sgovindan@partners.org.
Amy K HaraDepartment of Radiology, Mayo Clinic, Phoenix, AZ 85054, USA. hara.amy@mayo.edu.
Mitesh J BoradDepartment of Hematology/Oncology, Mayo Clinic, Scottsdale, AZ 85259, USA. borad.mitesh@mayo.edu.
Tanios Bekaii-SaabDepartment of Hematology/Oncology, Mayo Clinic, Scottsdale, AZ 85259, USA. bekaii-saab.tanios@mayo.edu.
Alex WallaceDepartment of Radiology, Mayo Clinic, Phoenix, AZ 85054, USA. wallace.alex@mayo.edu.
Hassan AlbadawiDepartment of Radiology, Division of Vascular & Interventional Radiology, Mayo Clinic, Phoenix, AZ 85054, USA. albadawi.hassan@mayo.edu.
Rahmi OkluDepartment of Radiology, Division of Vascular & Interventional Radiology, Mayo Clinic, Phoenix, AZ 85054, USA. oklu.rahmi@mayo.edu.
Mayo Clinic in Florida · USMayo Clinic in Arizona · USWinnMed · USMassachusetts General Hospital · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genotype, particularly Ras status, greatly affects prognosis and treatment of liver metastasis in colon cancer patients. This pilot aimed to apply word frequency analysis and a naive Bayes classifier on radiology reports to extract distinguishing imaging descriptors of wild-type colon cancer patients and those with v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog (KRAS) mutations. In this institutional-review-board-approved study, we compiled a SNaPshot mutation analysis dataset from 457 colon adenocarcinoma patients. From this cohort of patients, we analyzed radiology reports of 299 patients (> 32,000 reports) who either were wild-type (147 patients) or had a KRAS (152 patients) mutation. Our algorithm determined word frequency within the wild-type and mutant radiology reports and used a naive Bayes classifier to determine the probability of a given word belonging to either group. The classifier determined that words with a greater than 50% chance of being in the KRAS mutation group and which had the highest absolute probability difference compared to the wild-type group included: "several", "innumerable", "confluent", and "numerous" (

Indexed as

machine learningnaïve Bayesian classificationnatural language processingradiogenomicsRAS mutation

Identifiers

PMID28869500
PMCPMC5617950
OpenAlexW2752738401

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.