Evidence map›Paper›PMID 28869408›Full record

ArticleMicrobiology (Reading, England)2017

Involvement of signal peptidase I in Streptococcus sanguinis biofilm formation.

Jessica Aynapudi, Fadi El-Rami, Xiuchun Ge, Victoria Stone, Bin Zhu, Todd Kitten, Ping Xu

Open access · hybridAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Genetics ofMicrobiology spectrum · 2019
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jessica AynapudiPhilips Institute for Oral Health Research, Virginia Commonwealth University, Richmond, VA, USA.
Fadi El-RamiPhilips Institute for Oral Health Research, Virginia Commonwealth University, Richmond, VA, USA.
Xiuchun GePhilips Institute for Oral Health Research, Virginia Commonwealth University, Richmond, VA, USA.
Victoria StonePhilips Institute for Oral Health Research, Virginia Commonwealth University, Richmond, VA, USA.
Bin ZhuPhilips Institute for Oral Health Research, Virginia Commonwealth University, Richmond, VA, USA.
Todd KittenPhilips Institute for Oral Health Research, Virginia Commonwealth University, Richmond, VA, USA.
Ping XuPhilips Institute for Oral Health Research, Virginia Commonwealth University, Richmond, VA, USA.
Virginia Commonwealth University · US

Funding

Virus Vector Shared ResourceP30CA016059 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI Kim Felder Rhoads · 1985 to 2026
$51.0M
VCU Neuroscience Center Core GrantP30NS047463 · NINDS · VIRGINIA COMMONWEALTH UNIVERSITY · PI POVLISHOCK, JOHN T · 2003 to 2013
$5.0M
Interaction of Colonizer and Pathogen In Oral BiofilmR01DE023078 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI XU, PING · 2013 to 2017
$1.9M
Regulation Of Fitness And Virulence In Oral StreptococciR01DE018138 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI XU, PING · 2008 to 2012
$1.7M
SCANNING ELECTRON MICROSCOPE: PSEUDOMONAS AERUGINOSA, F TULARENSISS10RR022495 · NCRR · VIRGINIA COMMONWEALTH UNIVERSITY · PI HENDERSON, SCOTT C. · 2006 to 2006
$201k
NCI NIH HHS P30 CA016059NCRR NIH HHS S10 RR022495NIDCR NIH HHS R01 DE018138NIDCR NIH HHS R01 DE023078NINDS NIH HHS P30 NS047463
6 · The paper itself

Abstract

Biofilm accounts for 65-80 % of microbial infections in humans. Considerable evidence links biofilm formation by oral microbiota to oral disease and consequently systemic infections. Streptococcus sanguinis, a Gram-positive bacterium, is one of the most abundant species of the oral microbiota and it contributes to biofilm development in the oral cavity. Due to its altered biofilm formation, we investigated a biofilm mutant, ΔSSA_0351, that is deficient in type I signal peptidase (SPase) in this study. Although the growth curve of the ΔSSA_0351 mutant showed no significant difference from that of the wild-type strain SK36, biofilm assays using both microtitre plate assay and confocal laser scanning microscopy (CLSM) confirmed a sharp reduction in biofilm formation in the mutant compared to the wild-type strain and the paralogous mutant ΔSSA_0849. Scanning electron microscopy (SEM) revealed remarkable differences in the cell surface morphologies and chain length of the ΔSSA_0351 mutant compared with those of the wild-type strain. Transcriptomic and proteomic assays using RNA sequencing and mass spectrometry, respectively, were conducted on the ΔSSA_0351 mutant to evaluate the functional impact of SPase on biofilm formation. Subsequently, bioinformatics analysis revealed a number of proteins that were differentially regulated in the ΔSSA_0351 mutant, narrowing down the list of SPase substrates involved in biofilm formation to lactate dehydrogenase (SSA_1221) and a short-chain dehydrogenase (SSA_0291). With further experimentation, this list defined the link between SSA_0351-encoded SPase, cell wall biosynthesis and biofilm formation.

Indexed as

Bacterial ProteinsBiofilmsComputational BiologyCuesDatabases, GeneticData MiningGene Expression ProfilingMembrane ProteinsMutationProteomicsSerine EndopeptidasesStreptococcus sanguisBacterial ProteinsMembrane ProteinsSerine Endopeptidasestype I signal peptidase

Identifiers

PMID28869408
PMCPMC5817204
OpenAlexW2516055500

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.