Evidence map›Paper›PMID 28869036›Full record

ArticleeLife2017

Single methyl groups can act as toggle switches to specify transmembrane Protein-protein interactions.

Li He, Helena Steinocher, Ashish Shelar, Emily B Cohen, Erin N Heim, Birthe B Kragelund, Gevorg Grigoryan, Daniel DiMaio

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  5. Article
  6. Review
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  10. Article
  11. Article
  12. Unique transmembrane domain interactions differentially modulate integrin αvβ3 and αIIbβ3 function.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Regulation of C-C chemokine receptor 5 (CCR5) stability by LysThe Journal of biological chemistry · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Li HeDepartment of Genetics, Yale School of Medicine, New Haven, United States.
Helena SteinocherDepartment of Biology, Structural and NMR Laboratory, University of Copenhagen, Copenhagen, Denmark.
Ashish ShelarDepartment of Genetics, Yale School of Medicine, New Haven, United States.
Emily B CohenDepartment of Genetics, Yale School of Medicine, New Haven, United States.
Erin N HeimDepartment of Genetics, Yale School of Medicine, New Haven, United States.
Birthe B KragelundDepartment of Biology, Structural and NMR Laboratory, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0002-7454-1761
Gevorg GrigoryanDepartment of Computer Science, Dartmouth College, Hanover, United States.
Daniel DiMaioDepartment of Genetics, Yale School of Medicine, New Haven, United States.ORCID http://orcid.org/0000-0002-2060-5977
Yale University · USUniversity of Copenhagen · DKBeth Israel Deaconess Medical Center · USDartmouth College · USYale Cancer Center · US

Funding

Understanding the role of RNA-binding protein mutations in cancerP20GM113132 · NIGMS · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2016 to 2025
$25.9M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007499 · NIGMS · YALE UNIVERSITY · PI CARLSON, JOHN R, REINKE, VALERIE J · 1985 to 2022
$13.9M
CELL TRANSFORMATION BY BOVINE PAPILLOMAVIRUSR01CA037157 · NCI · YALE UNIVERSITY · PI DIMAIO, DANIEL C. · 1985 to 2019
$9.9M
CELL TRANSFORMATION BY BOVINE PAPILLOMAVIRUSR37CA037157 · NCI · YALE UNIVERSITY · PI DIMAIO, DANIEL · 1992 to 1999
–
NCI NIH HHS R01 CA037157NCI NIH HHS R37 CA037157NIGMS NIH HHS P20 GM113132NIGMS NIH HHS T32 GM007499
6 · The paper itself

Abstract

Transmembrane domains (TMDs) engage in protein-protein interactions that regulate many cellular processes, but the rules governing the specificity of these interactions are poorly understood. To discover these principles, we analyzed 26-residue model transmembrane proteins consisting exclusively of leucine and isoleucine (called LIL traptamers) that specifically activate the erythropoietin receptor (EPOR) in mouse cells to confer growth factor independence. We discovered that the placement of a single side chain methyl group at specific positions in a traptamer determined whether it associated productively with the TMD of the human EPOR, the mouse EPOR, or both receptors. Association of the traptamers with the EPOR induced EPOR oligomerization in an orientation that stimulated receptor activity. These results highlight the high intrinsic specificity of TMD interactions, demonstrate that a single methyl group can dictate specificity, and define the minimal chemical difference that can modulate the specificity of TMD interactions and the activity of transmembrane proteins.

Indexed as

AnimalsCell LineHumansIsoleucineLeucineMembrane ProteinsMiceProtein BindingProtein MultimerizationReceptors, ErythropoietinSubstrate SpecificityIsoleucineLeucineMembrane ProteinsReceptors, Erythropoietinbiochemistrybiophysicsmembranemolecular dynamicsNMRnoneprotein-protein interacctionsstructural biologytransmembrane proteinstraptamers

Identifiers

PMID28869036
PMCPMC5597333
OpenAlexW2752292393

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.