Evidence map›Paper›PMID 28867287›Full record

ArticleCell2017

Dynamic Control of X Chromosome Conformation and Repression by a Histone H4K20 Demethylase.

Katjuša Brejc, Qian Bian, Satoru Uzawa, Bayly S Wheeler, Erika C Anderson, David S King, Philip J Kranzusch, Christine G Preston, Barbara J Meyer

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. LncRNA-Histone Modification Crosstalk: Orchestrating Cancer Pathobiology.Naunyn-Schmiedeberg's archives of pharmacology · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Intrinsically Disordered Regions Define Unique Protein Interaction Networks in CHD Family Remodelers.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Genes & development · 2024
    Article
  20. Analysis of developmental gene expression using smFISH andbioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Katjuša BrejcHoward Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3204, USA.
Qian BianHoward Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3204, USA.
Satoru UzawaHoward Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3204, USA.
Bayly S WheelerHoward Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3204, USA.
Erika C AndersonHoward Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3204, USA.
David S KingHHMI Mass Spectrometry Laboratory, University of California, Berkeley, Berkeley, California 94720-3204, USA.
Philip J KranzuschHoward Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3204, USA.
Christine G PrestonHoward Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3204, USA.
Barbara J MeyerHoward Hughes Medical Institute and Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720-3204, USA. Electronic address: bjmeyer@berkeley.edu.
University of California, Berkeley · USHoward Hughes Medical Institute · US

Funding

NEMATODE SEX DETERMINATIONR01GM030702 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MEYER, BARBARA J · 1985 to 2018
$6.1M
NEMATODE SEX DETERMINATIONR37GM030702 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MEYER, BARBARA J · 1995 to 2004
$2.0M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Linking dosage compensation complex assembly to X chromosome gene regulationF32GM100647 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI WHEELER, BAYLY SIMPSON · 2012 to 2013
$106k
NIGMS NIH HHS F32 GM100647NIGMS NIH HHS R01 GM030702NIGMS NIH HHS R37 GM030702NIH HHS S10 OD018174
6 · The paper itself

Abstract

Chromatin modification and higher-order chromosome structure play key roles in gene regulation, but their functional interplay in controlling gene expression is elusive. We have discovered the machinery and mechanism underlying the dynamic enrichment of histone modification H4K20me1 on hermaphrodite X chromosomes during C. elegans dosage compensation and demonstrated H4K20me1's pivotal role in regulating higher-order chromosome structure and X-chromosome-wide gene expression. The structure and the activity of the dosage compensation complex (DCC) subunit DPY-21 define a Jumonji demethylase subfamily that converts H4K20me2 to H4K20me1 in worms and mammals. Selective inactivation of demethylase activity eliminates H4K20me1 enrichment in somatic cells, elevates X-linked gene expression, reduces X chromosome compaction, and disrupts X chromosome conformation by diminishing the formation of topologically associating domains (TADs). Unexpectedly, DPY-21 also associates with autosomes of germ cells in a DCC-independent manner to enrich H4K20me1 and trigger chromosome compaction. Our findings demonstrate the direct link between chromatin modification and higher-order chromosome structure in long-range regulation of gene expression.

Indexed as

Gene Expression RegulationAmino Acid SequenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCarrier ProteinsDosage Compensation, GeneticEmbryo, NonmammalianJumonji Domain-Containing Histone DemethylasesModels, MolecularMutationPiperidinesSequence AlignmentThiophenesX ChromosomeCaenorhabditis elegans ProteinsCarrier ProteinsDPY-21 protein, C elegansJumonji Domain-Containing Histone DemethylasesPiperidinesrosbinThiopheneschromatin modificationchromosome structurecondensinDPY-21H4K20me1H4K20me2 demethylasehistone demethylaseJumonji C domainROSBINX chromosome dosage compensation

Identifiers

PMID28867287
PMCPMC5678999
OpenAlexW2752333387

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.