Evidence map›Paper›PMID 28866851›Full record

ArticleMolecular genetics and genomics : MGG2018

Systematic transcriptome-wide analysis of mRNA-miRNA interactions reveals the involvement of miR-142-5p and its target (FOXO3) in skeletal muscle growth in chickens.

Zhenhui Li, Bahareldin Ali Abdalla, Ming Zheng, Xiaomei He, Bolin Cai, Peigong Han, Hongjia Ouyang, Biao Chen, Qinghua Nie, Xiquan Zhang

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
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  5. Article
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  8. Genes · 2023
    Article
  9. Response of plasma microRNAs to nusinersen treatment in patients with SMA.Annals of clinical and translational neurology · 2022
    Article
  10. Review
  11. Article
  12. Review
  13. Article
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  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Zhenhui LiDepartment of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Wushan Street, Tianhe District, Guangzhou, 510642, Guangdong, China.
Bahareldin Ali AbdallaDepartment of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Wushan Street, Tianhe District, Guangzhou, 510642, Guangdong, China.
Ming ZhengDepartment of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Wushan Street, Tianhe District, Guangzhou, 510642, Guangdong, China.
Xiaomei HeDepartment of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Wushan Street, Tianhe District, Guangzhou, 510642, Guangdong, China.
Bolin CaiDepartment of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Wushan Street, Tianhe District, Guangzhou, 510642, Guangdong, China.
Peigong HanDepartment of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Wushan Street, Tianhe District, Guangzhou, 510642, Guangdong, China.
Hongjia OuyangDepartment of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Wushan Street, Tianhe District, Guangzhou, 510642, Guangdong, China.
Biao ChenDepartment of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Wushan Street, Tianhe District, Guangzhou, 510642, Guangdong, China.
Qinghua NieDepartment of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Wushan Street, Tianhe District, Guangzhou, 510642, Guangdong, China. nqinghua@scau.edu.cn.
Xiquan ZhangDepartment of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Wushan Street, Tianhe District, Guangzhou, 510642, Guangdong, China.
South China Agricultural University · CN

Funding

the Natural Scientific Foundation of China 31571269the Program for New Century Excellent Talents in University NCET-13-0803
6 · The paper itself

Abstract

The goal of this study was to perform a systematic transcriptome-wide analysis of mRNA-miRNA interactions and to identify candidates involved in the interplay between miRNAs and mRNAs that regulate chicken muscle growth. We used our previously published mRNA (GSE72424) and miRNA (GSE62971) deep sequencing data from two-tailed samples [i.e., the highest (h) and lowest (l) body weights] of Recessive White Rock (WRR) and Xinghua (XH) chickens to conduct integrative analyses of the miRNA-mRNA interactions involved in chicken skeletal muscle growth. A total of 162, 15, 173, and 27 miRNA-mRNA pairs with negatively correlated expression patterns were identified in miRNA-mRNA networks constructed on the basis of the WRR

Indexed as

AnimalsChickensGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Regulatory NetworksMicroRNAsMuscle DevelopmentMuscle, SkeletalRNA, MessengerTranscriptomeMicroRNAsRNA, MessengerFOXO3miR-142-5pmiRNA–mRNA networkSkeletal muscle growth

Identifiers

PMID28866851
OpenAlexW2751106332

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.