Evidence map›Paper›PMID 28865010›Full record

ArticleCurrent microbiology2018

Genome Characterization of Oleaginous Aspergillus oryzae BCC7051: A Potential Fungal-Based Platform for Lipid Production.

Chinae Thammarongtham, Intawat Nookaew, Tayvich Vorapreeda, Tanawut Srisuk, Miriam L Land, Sukanya Jeennor, Kobkul Laoteng

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Current microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Two-Step Engineering of Food-GradeJournal of fungi (Basel, Switzerland) · 2026
    Article
  4. Computational and structural biotechnology journal · 2026
    Article
  5. Distinction BetweenJournal of fungi (Basel, Switzerland) · 2025
    Article
  6. Reconstruction of a Genome-Scale Metabolic Model forInternational journal of molecular sciences · 2025
    Article
  7. Review
  8. Development ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  9. Article
  10. Comparative Genomics ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  11. The Exploring Functional Role of Ammonium Transporters ofInternational journal of molecular sciences · 2022
    Article
  12. Article
  13. Novel pentose-regulated promoter ofBiotechnology reports (Amsterdam, Netherlands) · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Cleaning the Cellular Factory-Deletion of McrA inFrontiers in fungal biology · 2021
    Article
  19. Comparison of TwoFrontiers in microbiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Chinae ThammarongthamBiochemical Engineering and Pilot Plant Research and Development Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), King Mongkut's University of Technology Thonburi, Bangkhuntien, Bangkok, 10150, Thailand.
Intawat NookaewDepartment of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Tayvich VorapreedaBiochemical Engineering and Pilot Plant Research and Development Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), King Mongkut's University of Technology Thonburi, Bangkhuntien, Bangkok, 10150, Thailand.
Tanawut SrisukSystems Biology and Bioinformatics Research Group, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkhuntien, Bangkok, 10150, Thailand.
Miriam L LandComparative Genomics Group, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Sukanya JeennorBioprocess Technology Laboratory, Food Biotechnology Research Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Thailand Science Park, Pathum Thani, 12120, Thailand.
Kobkul LaotengBioprocess Technology Laboratory, Food Biotechnology Research Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Thailand Science Park, Pathum Thani, 12120, Thailand. kobkul@biotec.or.th.
National Center for Genetic Engineering and Biotechnology · THKing Mongkut's University of Technology Thonburi · THOak Ridge National Laboratory · US

Funding

National Center for Genetic Engineering and Biotechnology P-14-50613The Swedish Research Council VR-2013-4504
6 · The paper itself

Abstract

The selected robust fungus, Aspergillus oryzae strain BCC7051 is of interest for biotechnological production of lipid-derived products due to its capability to accumulate high amount of intracellular lipids using various sugars and agro-industrial substrates. Here, we report the genome sequence of the oleaginous A. oryzae BCC7051. The obtained reads were de novo assembled into 25 scaffolds spanning of 38,550,958 bps with predicted 11,456 protein-coding genes. By synteny mapping, a large rearrangement was found in two scaffolds of A. oryzae BCC7051 as compared to the reference RIB40 strain. The genetic relationship between BCC7051 and other strains of A. oryzae in terms of aflatoxin production was investigated, indicating that the A. oryzae BCC7051 was categorized into group 2 nonaflatoxin-producing strain. Moreover, a comparative analysis of the structural genes focusing on the involvement in lipid metabolism among oleaginous yeast and fungi revealed the presence of multiple isoforms of metabolic enzymes responsible for fatty acid synthesis in BCC7051. The alternative routes of acetyl-CoA generation as oleaginous features and malate/citrate/pyruvate shuttle were also identified in this A. oryzae strain. The genome sequence generated in this work is a dedicated resource for expanding genome-wide study of microbial lipids at systems level, and developing the fungal-based platform for production of diversified lipids with commercial relevance.

Indexed as

Genome, FungalAspergillus oryzaeFungal ProteinsLipidsMalatesSyntenyFungal ProteinsLipidsMalatesmalic acid

Identifiers

PMID28865010
OpenAlexW2753528798

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.