Evidence map›Paper›PMID 28864221›Full record

ArticleComparative biochemistry and physiology. Part B, Biochemistry & molecular biology2017

A START-domain-containing protein is a novel marker of nervous system components of the sea cucumber Holothuria glaberrima.

Edwin A Rosado-Olivieri, Gibram A Ramos-Ortiz, Josué Hernández-Pasos, Carlos A Díaz-Balzac, Edwin Vázquez-Rosa, Griselle Valentín-Tirado, Irving E Vega, José E García-Arrarás

Open access · greenAbstract read
In one paragraph

Article in Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Edwin A Rosado-OlivieriDepartment of Biology, University of Puerto Rico-Río Piedras Campus, San Juan PR 00931, Puerto Rico. Electronic address: erosadoolivieri@g.harvard.edu.
Gibram A Ramos-OrtizDepartment of Biology, University of Puerto Rico-Río Piedras Campus, San Juan PR 00931, Puerto Rico. Electronic address: gramosor@mail.einstein.yu.edu.
Josué Hernández-PasosDepartment of Biology, University of Puerto Rico-Río Piedras Campus, San Juan PR 00931, Puerto Rico.
Carlos A Díaz-BalzacDepartment of Biology, University of Puerto Rico-Río Piedras Campus, San Juan PR 00931, Puerto Rico. Electronic address: carlos.diaz-balzac@med.einstein.yu.edu.
Edwin Vázquez-RosaDepartment of Chemistry, University of Puerto Rico Río Piedras Campus, San Juan PR 00931, Puerto Rico.
Griselle Valentín-TiradoDepartment of Biology, University of Puerto Rico-Río Piedras Campus, San Juan PR 00931, Puerto Rico.
Irving E VegaTranslational Science & Molecular Medicine, Michigan State University, Grand Rapids, MI 49503, United States.
José E García-ArrarásDepartment of Biology, University of Puerto Rico-Río Piedras Campus, San Juan PR 00931, Puerto Rico. Electronic address: jegarcia@hpcf.upr.edu.
University of Puerto Rico at Río Piedras · PRMichigan State University · US

Funding

Upgrade Laboratories Facilities at UPR-Rio PiedrasR25GM061151 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI CARBALLEIRA, NESTOR MANUEL · 2001 to 2023
$32.5M
RIO PIEDRAS MARC U*STAR DEVELOPMENT PROGRAMT34GM007821 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI CARBALLEIRA, NESTOR MANUEL · 1985 to 2020
$20.3M
TRAINING PROGRAM IN FREE RADICAL AND RADIATION BIOLOGYT32CA078586 · NCI · UNIVERSITY OF IOWA · PI SPITZ, DOUGLAS ROBERT · 1999 to 2024
$5.7M
Molecular control of intestinal regenerationSC1GM084770 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI GARCIA-ARRARAS, JOSE E · 2008 to 2011
$1.5M
Neuroscience Research Opportunities to Increase Diversity (NeuroID)R25GM097635 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI GARCIA-ARRARAS, JOSE E, VEGA, IRVING E · 2010 to 2011
$585k
Nervous system regeneration, molecular basis in echinodermsR15NS081686 · NINDS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI GARCIA-ARRARAS, JOSE E · 2013 to 2013
$444k
Gene profiling of nervous system regeneration using a novel model organismR03NS065275 · NINDS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI GARCIA-ARRARAS, JOSE E · 2009 to 2010
$149k
NCI NIH HHS T32 CA078586NIGMS NIH HHS R25 GM061151NIGMS NIH HHS R25 GM097635NIGMS NIH HHS SC1 GM084770NIGMS NIH HHS T34 GM007821NINDS NIH HHS R03 NS065275NINDS NIH HHS R15 NS081686
6 · The paper itself

Abstract

One of the main challenges faced by investigators studying the nervous system of members of the phylum Echinodermata is the lack of markers to identify nerve cells and plexi. Previous studies have utilized an antibody, RN1, that labels most of the nervous system structures of the sea cucumber Holothuria glaberrima and other echinoderms. However, the antigen recognized by RN1 remained unknown. In the present work, the antigen has been characterized by immunoprecipitation, tandem mass spectrometry, and cDNA cloning. The RN1 antigen contains a START lipid-binding domain found in Steroidogenic Acute Regulatory (StAR) proteins and other lipid-binding proteins. Phylogenetic tree assembly showed that the START domain is highly conserved among echinoderms. We have named this antigen HgSTARD10 for its high sequence similarity to the vertebrate orthologs. Gene and protein expression analyses revealed an abundance of HgSTARD10 in most H. glaberrima tissues including radial nerve, intestine, muscle, esophagus, mesentery, hemal system, gonads and respiratory tree. Molecular cloning of HgSTARD10, consequent protein expression and polyclonal antibody production revealed the STARD10 ortholog as the antigen recognized by the RN1 antibody. Further characterization into this START domain-containing protein will provide important insights for the biochemistry, physiology and evolution of deuterostomes.

Indexed as

Amino Acid SequenceAnimalsAntibodiesBinding SitesBiomarkersCloning, MolecularEscherichia coliGene ExpressionHolothuriaNerve Tissue ProteinsNervous SystemNeuronsOrgan SpecificityPhosphoproteinsPhylogenyProtein BindingAntibodiesBiomarkersNerve Tissue ProteinsPhosphoproteinsRecombinant ProteinsSteroidogenic Acute Regulatory Protein

Identifiers

PMID28864221
PMCPMC5772606
OpenAlexW2752728224

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.