Evidence map›Paper›PMID 28862868›Full record

ArticleBiochemistry2017

DNA Polymerase β Cancer-Associated Variant I260M Exhibits Nonspecific Selectivity toward the β-γ Bridging Group of the Incoming dNTP.

Khadijeh S Alnajjar, Amirsoheil Negahbani, Maryam Nakhjiri, Ivan S Krylov, Boris A Kashemirov, Charles E McKenna, Myron F Goodman, Joann B Sweasy

Abstract read
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Inhibition of DNA Repair in Cancer Therapy: Toward a Multi-Target Approach.International journal of molecular sciences · 2020
    Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Khadijeh S AlnajjarDepartment of Therapeutic Radiology and Department of Genetics, Yale University School of Medicine , New Haven, Connecticut 06520, United States.ORCID 0000-0002-0219-6807
Amirsoheil NegahbaniDepartment of Chemistry, University of Southern California , Los Angeles, California 90089, United States.
Maryam NakhjiriDepartment of Chemistry, University of Southern California , Los Angeles, California 90089, United States.
Ivan S KrylovDepartment of Chemistry, University of Southern California , Los Angeles, California 90089, United States.
Boris A KashemirovDepartment of Chemistry, University of Southern California , Los Angeles, California 90089, United States.
Charles E McKennaDepartment of Chemistry, University of Southern California , Los Angeles, California 90089, United States.
Myron F GoodmanDepartment of Chemistry, University of Southern California , Los Angeles, California 90089, United States.
Joann B SweasyDepartment of Therapeutic Radiology and Department of Genetics, Yale University School of Medicine , New Haven, Connecticut 06520, United States.
University of Southern California · USYale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
DNA POLYMERASE BETA AND MUTAGENESISR01CA080830 · NCI · YALE UNIVERSITY · PI SWEASY, JOANN B. · 1999 to 2018
$6.1M
Molecular Mechanisms of Human DNA Polymerase Beta Catalysis, Fidelity and Selective InhibitionU19CA177547 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI GOODMAN, MYRON · 2013 to 2017
$5.5M
NCATS NIH HHS UL1 TR001863NCI NIH HHS R01 CA080830NCI NIH HHS U19 CA177547
6 · The paper itself

Abstract

The hydrophobic hinge region of DNA polymerase β (pol β) is located between the fingers and palm subdomains. The hydrophobicity of the hinge region is important for maintaining the geometry of the binding pocket and for the selectivity of the enzyme. Various cancer-associated pol β variants in the hinge region have reduced fidelity resulting from a decreased discrimination at the level of dNTP binding. Specifically, I260M, a prostate cancer-associated variant of pol β, has been shown to have a reduced discrimination during dNTP binding and also during nucleotidyl transfer. To test whether fidelity of the I260M variant is dependent on leaving group chemistry, we employed a toolkit comprising dNTP bisphosphonate analogues modified at the β-γ bridging methylene to modulate leaving group (pCXYp mimicking PP

Indexed as

MutationDeoxyribonucleotidesDNA Polymerase betaKineticsModels, MolecularNeoplasmsProtein BindingProtein ConformationSubstrate SpecificityThymine NucleotidesDeoxyribonucleotidesDNA Polymerase betathymidine 5'-triphosphateThymine Nucleotides

Identifiers

PMID28862868
PMCPMC5634933
OpenAlexW2752695722

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.