Evidence map›Paper›PMID 28862181›Full record

ArticleThe Indian journal of medical research2017

Identification of a novel homozygous mutation in transmembrane channel like 1 (

Pawan Kumar Singh, Manju Ghosh, Shipra Sharma, Shivaram Shastri, Neerja Gupta, Madhumita Roy Chowdhury, Anuranjan Anand, Madhulika Kabra

Open access · diamondAbstract read
In one paragraph

Article in The Indian journal of medical research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Pawan Kumar SinghDivision of Genetics, Department of Pediatrics, All Institute of Medical Sciences, New Delhi, India.
Manju GhoshDivision of Genetics, Department of Pediatrics, All Institute of Medical Sciences, New Delhi, India.
Shipra SharmaDivision of Genetics, Department of Pediatrics, All Institute of Medical Sciences, New Delhi, India.
Shivaram ShastriDivision of Genetics, Department of Pediatrics, All Institute of Medical Sciences, New Delhi, India.
Neerja GuptaDivision of Genetics, Department of Pediatrics, All Institute of Medical Sciences, New Delhi, India.
Madhumita Roy ChowdhuryDivision of Genetics, Department of Pediatrics, All Institute of Medical Sciences, New Delhi, India.
Anuranjan AnandMolecular Biology & Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bengaluru, India.
Madhulika KabraDivision of Genetics, Department of Pediatrics, All Institute of Medical Sciences, New Delhi, India.
All India Institute of Medical Sciences · INJawaharlal Nehru Centre for Advanced Scientific Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND &

objectivesHearing impairment is a common and heterogeneous sensory disorder in humans. Among about 90 genes, which are known to be associated with hearing impairment, mutations in the GJB2 (gap junction protein beta 2) gene are the most prevalent in individuals with hereditary hearing loss. Contribution of the other deafness-causing genes is relatively poorly understood. Here, we present our findings on two families with transmembrane channel like 1 (TMC1) gene variants of the 47 families with nonsyndromic hearing loss (NSHL) studied.

methodsForty seven families including 26 consanguineous families with at least two hearing impaired children and one normal hearing child and 21 non-consanguineous families having at least three hearing impaired children and one normal hearing child were enrolled for this study. Genetic linkage studies were carried out in 41 families that were GJB2 (Connexin 26) negative. Seven polymorphic short tandem repeat markers at the DFNB7/11 locus were studied employing fluorescently labelled markers.

resultsA novel homozygous missense mutation c.1283C>A (p.Ala428Asp) was identified co-segregating with hearing loss. This change results in substitution of a highly conserved polar alanine to a charged aspartic acid and is predicted to be deleterious. In addition, a previously reported nonsense mutation, p.R34X in TMC1, was found. INTERPRETATION &

conclusionsWhile mutations in TMC1 are not as common a cause of NSHL as those in GJB2, TMC1 should be considered for diagnostic investigations in cases of NSHL in GJB2-negative families.

Indexed as

Connexin 26ConnexinsDeafnessFemaleGenetic LinkageGenotypeHaplotypesHomozygoteHumansIndiaMaleMembrane ProteinsMutationPedigreeConnexin 26ConnexinsGJB2 protein, humanMembrane ProteinsTMC1 protein, human

Identifiers

PMID28862181
PMCPMC5663163
OpenAlexW2772804820

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