Evidence map›Paper›PMID 28861396›Full record

ArticleFrontiers in cellular and infection microbiology2017

The Role of OmpR in the Expression of Genes of the KdgR Regulon Involved in the Uptake and Depolymerization of Oligogalacturonides in

Marta Nieckarz, Adrianna Raczkowska, Karolina Jaworska, Ewa Stefańska, Karolina Skorek, Dorota Stosio, Katarzyna Brzostek

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Differential Expression ofMolecules (Basel, Switzerland) · 2021
    Article
  3. The Regulator OmpR inInternational journal of molecular sciences · 2021
    Article
  4. Urease Expression in PathogenicFrontiers in microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Marta NieckarzDepartment of Applied Microbiology, Faculty of Biology, Institute of Microbiology, University of WarsawWarsaw, Poland.
Adrianna RaczkowskaDepartment of Applied Microbiology, Faculty of Biology, Institute of Microbiology, University of WarsawWarsaw, Poland.
Karolina JaworskaDepartment of Applied Microbiology, Faculty of Biology, Institute of Microbiology, University of WarsawWarsaw, Poland.
Ewa StefańskaDepartment of Applied Microbiology, Faculty of Biology, Institute of Microbiology, University of WarsawWarsaw, Poland.
Karolina SkorekDepartment of Applied Microbiology, Faculty of Biology, Institute of Microbiology, University of WarsawWarsaw, Poland.
Dorota StosioDepartment of Applied Microbiology, Faculty of Biology, Institute of Microbiology, University of WarsawWarsaw, Poland.
Katarzyna BrzostekDepartment of Applied Microbiology, Faculty of Biology, Institute of Microbiology, University of WarsawWarsaw, Poland.
University of Warsaw · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oligogalacturonide (OGA)-specific porins of the KdgM family have previously been identified and characterized in enterobacterial plant pathogens. We found that deletion of the gene encoding response regulator OmpR causes the porin KdgM2 to become one of the most abundant proteins in the outer membrane of the human enteropathogen

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBase Sequencebeta-GalactosidaseDetergentsDNA, BacterialGene Expression ProfilingGenes, BacterialGenes, ReporterMicrobial Sensitivity TestsOperonPlant DiseasesPlant LeavesPlasmidsPolysaccharide-LyasesPorinsBacterial Proteinsbeta-GalactosidaseDetergentsDNA, BacterialKdgR protein, Erwinia chrysanthemipectate lyasePolysaccharide-LyasesPorinsReactive Oxygen SpeciesRepressor ProteinsKdgM porinsKdgROmpRpectate lyaseYersinia enterocolitica

Identifiers

PMID28861396
PMCPMC5559549
OpenAlexW2749137898

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.