Evidence map›Paper›PMID 28860602›Full record

ArticleScientific reports2017

Gene expression analysis of whole blood RNA from pigs infected with low and high pathogenic African swine fever viruses.

Crystal Jaing, Raymond R R Rowland, Jonathan E Allen, Andrea Certoma, James B Thissen, John Bingham, Brenton Rowe, John R White, James W Wynne, Dayna Johnson and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 66 citations in OpenAlex.

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  13. Comparative genomic and transcriptomic analyses of African swine fever virus strains.Computational and structural biotechnology journal · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Crystal JaingPhysical & Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, California, United States of America. jaing2@llnl.gov.
Raymond R R RowlandDepartment of Diagnostic Medicine and Pathobiology, Kansas State University, Manhattan, Kansas, United States of America.
Jonathan E AllenComputation Directorate, Lawrence Livermore National Laboratory, Livermore, California, United States of America.
Andrea CertomaCSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia.
James B ThissenPhysical & Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, California, United States of America.
John BinghamCSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia.
Brenton RoweCSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia.
John R WhiteCSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia.
James W WynneCSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia.
Dayna JohnsonCSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia.
Natasha N GaudreaultDepartment of Diagnostic Medicine and Pathobiology, Kansas State University, Manhattan, Kansas, United States of America.
David T WilliamsCSIRO Australian Animal Health Laboratory, Geelong, Victoria, Australia.
Commonwealth Scientific and Industrial Research Organisation · AUAustralian Centre for Disease Preparedness · AULawrence Livermore National Laboratory · USKansas State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

African swine fever virus (ASFV) is a macrophage-tropic virus responsible for ASF, a transboundary disease that threatens swine production world-wide. Since there are no vaccines available to control ASF after an outbreak, obtaining an understanding of the virus-host interaction is important for developing new intervention strategies. In this study, a whole transcriptomic RNA-Seq method was used to characterize differentially expressed genes in pigs infected with a low pathogenic ASFV isolate, OUR T88/3 (OURT), or the highly pathogenic Georgia 2007/1 (GRG). After infection, pigs infected with OURT showed no or few clinical signs; whereas, GRG produced clinical signs consistent with acute ASF. RNA-Seq detected the expression of ASFV genes from the whole blood of the GRG, but not the OURT pigs, consistent with the pathotypes of these strains and the replication of GRG in circulating monocytes. Even though GRG and OURT possess different pathogenic properties, there was significant overlap in the most upregulated host genes. A small number of differentially expressed microRNAs were also detected in GRG and OURT pigs. These data confirm previous studies describing the response of macrophages and lymphocytes to ASFV infection, as well as reveal unique gene pathways upregulated in response to infection with GRG.

Indexed as

TranscriptomeAfrican Swine FeverAnimalsAsfarviridaeRNASwineRNA

Identifiers

PMID28860602
PMCPMC5579198
OpenAlexW2747168263

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.