Evidence map›Paper›PMID 28859616›Full record

ArticleBMC infectious diseases2017

Molecular characterization of hepatitis B virus in Vietnam.

Thi Ton Taht Bui, Tan Thanh Tran, My Ngoc Nghiem, Pierre Rahman, Thi Thanh Thanh Tran, Man Nguyen Huy Dinh, Manh Hung Le, Van Vinh Chau Nguyen, Guy Thwaites, Motiur Rahman

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

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  17. Understanding Risk Behaviors of Vietnamese Adults with Chronic Hepatitis B in an Urban Setting.International journal of environmental research and public health · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 5 countries.

Thi Ton Taht BuiHospital for Tropical Diseases, Ho Chi Minh City, Vietnam.
Tan Thanh TranOxford University Clinical Research Unit, Toronto, Canada.
My Ngoc NghiemHospital for Tropical Diseases, Ho Chi Minh City, Vietnam.
Pierre RahmanMount Sinai Hospital, Toronto, Canada.
Thi Thanh Thanh TranOxford University Clinical Research Unit, Toronto, Canada.
Man Nguyen Huy DinhHospital for Tropical Diseases, Ho Chi Minh City, Vietnam.
Manh Hung LeHospital for Tropical Diseases, Ho Chi Minh City, Vietnam.
Van Vinh Chau NguyenHospital for Tropical Diseases, Ho Chi Minh City, Vietnam.
Guy ThwaitesOxford University Clinical Research Unit, Toronto, Canada.
Motiur RahmanOxford University Clinical Research Unit, Toronto, Canada. mrahman@oucru.org.ORCID 0000-0002-6702-5355
Hospital for Tropical Diseases · VNAngkor Hospital for Children · KHHospital for Tropical Diseases · GBMount Sinai Hospital · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHepatitis B virus (HBV) infection is a major public health problem globally. HBV genotypes and subgenotypes influence disease transmission, progression, and treatment outcome. A study was conducted among treatment naive chronic HBV patients in southern Vietnam to determine the genotypes and subgenotypes of HBV.

methodsA prospective, exploratory study was conducted among treatment naïve chronic HBV patients attending at the Hospital for Tropical Diseases, in Ho Chi Minh City, Vietnam during 2012, 2014 and 2016. HBV DNA positive samples (systematically selected 2% of all treatment naïve chronic patients during 2012 and 2014, and 8% of all treatment naïve chronic patients during 2016) were subjected to whole genome sequencing (WGS) either by Sanger or Illumina sequencing. WGS was used to define genotype, sub-genotype, recombination, and the prevalence of drug resistance and virulence-associated mutations.

resultsOne hundred thirty five treatment naïve chronic HBV patients including 18 from 2012, 24 from 2014, and 93 from 2016 were enrolled. Of 135 sequenced viruses, 72.6% and 27.4% were genotypes B and C respectively. Among genotype B isolates, 87.8% and 12.2% were subgenotypes B4 and B2 respectively. A G1896A mutation in the precore gene was present in 30.6% of genotype B isolates. The genotype C isolates were all subgenotype C1 and 78.4% (29/37) of them had at least one basal core promoter (BCP) mutation. A1762T and G1764 T mutations and a double mutation (A1762T and G1764 T) in the BCP region were significantly more frequent in genotype C1 isolates (p < 0.001).

conclusionHBV genotype B including subgenotype B4 is predominant in southern Vietnam. However, one fourth of the chronic HBV infections were caused by subgenotype C1.

Indexed as

MutationAdultDNA, ViralDrug Resistance, ViralFemaleGenome, ViralGenotypeHepatitis B, ChronicHepatitis B Surface AntigensHepatitis B virusHumansMaleMiddle AgedPrevalencePromoter Regions, GeneticProspective StudiesDNA, ViralHepatitis B Surface Antigenspresurface protein 1, hepatitis B surface antigenpresurface protein 2, hepatitis B surface antigenProtein PrecursorsGenotypeHepatitis BSubgenotypeVietnam

Identifiers

PMID28859616
PMCPMC5580302
OpenAlexW2751353054

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.