Evidence map›Paper›PMID 28859436›Full record

ArticleThe Journal of infectious diseases2017

Prevalence of Drug-Resistant Minority Variants in Untreated HIV-1-Infected Individuals With and Those Without Transmitted Drug Resistance Detected by Sanger Sequencing.

Dana S Clutter, Shuntai Zhou, Vici Varghese, Soo-Yon Rhee, Benjamin A Pinsky, W Jeffrey Fessel, Daniel B Klein, Ean Spielvogel, Susan P Holmes, Leo B Hurley and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
  4. Article
  5. Article
  6. Full-spectrum HIV drug resistance mutation detection by high-resolution complete pol gene sequencing.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Comparison of anJournal of clinical microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Dana S ClutterDivision of Infectious Diseases and Geographic Medicine.
Shuntai ZhouDepartment of Biochemistry and Biophysics, University of North Carolina-Chapel Hill.
Vici VargheseDivision of Infectious Diseases and Geographic Medicine.
Soo-Yon RheeDivision of Infectious Diseases and Geographic Medicine.
Benjamin A PinskyDivision of Infectious Diseases and Geographic Medicine.
W Jeffrey FesselDepartment of Internal Medicine, San Francisco Medical Center, Kaiser Permanente Northern California,San Francisco.
Daniel B KleinDepartment of Infectious Diseases, San Leandro Medical Center, Kaiser Permanente Northern California,San Leandro.
Ean SpielvogelDepartment of Biochemistry and Biophysics, University of North Carolina-Chapel Hill.
Susan P HolmesDepartment of Statistics, Stanford University, Stanford.
Leo B HurleyDivision of Research, Kaiser Permanente Northern California, Oakland, California.
Michael J SilverbergDivision of Research, Kaiser Permanente Northern California, Oakland, California.
Ronald SwanstromDepartment of Biochemistry and Biophysics, University of North Carolina-Chapel Hill.
Robert W ShaferDivision of Infectious Diseases and Geographic Medicine.
University of North Carolina at Chapel Hill · USKaiser Permanente · USStanford University · USKaiser Permanente San Francisco Medical Center · USKaiser Permanente San Leandro Medical Center · US

Funding

PUBLIC HIV DRUG RESISTANCE DATABASER01AI068581 · NIAID · STANFORD UNIVERSITY · PI SHAFER, ROBERT WILLIAM · 2006 to 2017
$6.2M
Global Epidemiology of Infectious DiseasesT32AI052073 · NIAID · STANFORD UNIVERSITY · PI Angelle Desiree LaBeaud, Stephen Patrick Luby · 2003 to 2026
$4.2M
Biological Properties of HIV-1 V3 Evolutionary VariantsR56AI044667 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SWANSTROM, RONALD I · 2016 to 2016
$396k
NIAID NIH HHS R01 AI068581NIAID NIH HHS R56 AI044667NIAID NIH HHS T32 AI052073
6 · The paper itself

Abstract

Minority variant human immunodeficiency virus type 1 (HIV-1) nonnucleoside reverse transcriptase inhibitor (NNRTI) resistance mutations are associated with an increased risk of virological failure during treatment with NNRTI-containing regimens. To determine whether individuals to whom variants with isolated NNRTI-associated drug resistance were transmitted are at increased risk of virological failure during treatment with a non-NNRTI-containing regimen, we identified minority variant resistance mutations in 33 individuals with isolated NNRTI-associated transmitted drug resistance and 49 matched controls. We found similar proportions of overall and nucleoside reverse transcriptase inhibitor-associated minority variant resistance mutations in both groups, suggesting that isolated NNRTI-associated transmitted drug resistance may not be a risk factor for virological failure during treatment with a non-NNRTI-containing regimen.

Indexed as

AdultCD4 Lymphocyte CountDrug Resistance, ViralFemaleHIV-1HIV InfectionsHumansMaleMutationReverse Transcriptase InhibitorsSequence Analysis, DNAReverse Transcriptase Inhibitorsantiretroviral therapydrug resistanceHIV-1minority variantnext-generation sequencing

Identifiers

PMID28859436
PMCPMC5853472
OpenAlexW2737278125

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.