Evidence map›Paper›PMID 28859374›Full record

ArticleJournal of experimental botany2017

Vitamin B1 diversity and characterization of biosynthesis genes in cassava.

Nathalie Mangel, Jared B Fudge, Teresa B Fitzpatrick, Wilhelm Gruissem, Hervé Vanderschuren

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. B vitamin supply in plants and humans: the importance of vitamer homeostasis.The Plant journal : for cell and molecular biology · 2022
    Review
  9. Article
  10. Frontiers in plant science · 2022
    Article
  11. Natural Variation in Vitamin BFrontiers in plant science · 2022
    Article
  12. Article
  13. Article
  14. The importance of thiamine (vitamin BThe Journal of biological chemistry · 2020
    Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Nathalie MangelDepartment of Biology, ETH Zurich, 8092 Zurich, Switzerland.
Jared B FudgeDepartment of Botany and Plant Biology, University of Geneva, 1211 Geneva, Switzerland.
Teresa B FitzpatrickDepartment of Botany and Plant Biology, University of Geneva, 1211 Geneva, Switzerland.
Wilhelm GruissemDepartment of Biology, ETH Zurich, 8092 Zurich, Switzerland.
Hervé VanderschurenDepartment of Biology, ETH Zurich, 8092 Zurich, Switzerland.
ETH Zurich · CHUniversity of Geneva · CHGembloux Agro-Bio Tech · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vitamin B1, which consists of the vitamers thiamin and its phosphorylated derivatives, is an essential micronutrient for all living organisms because it is required as a metabolic cofactor in several enzymatic reactions. Genetic diversity of vitamin B1 biosynthesis and accumulation has not been investigated in major crop species other than rice and potato. We analyzed cassava germplasm for accumulation of B1 vitamers. Vitamin B1 content in leaves and roots of 41 cassava accessions showed significant variation between accessions. HPLC analyses of B1 vitamers revealed distinct profiles in cassava leaves and storage roots, with nearly equal relative levels of thiamin pyrophosphate and thiamin monophosphate in leaves, but mostly thiamin pyrophosphate in storage roots. Unusually, the cassava genome has two genes encoding the 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate synthase, THIC (MeTHIC1 and MeTHIC2), both of which carry a riboswitch in the 3'-UTR, as well as the adenylated thiazole synthase, THI1 (MeTHI1a and MeTHI1b). The THIC and THI1 genes are expressed at very low levels in storage roots compared with the accumulation of vitamin B1, indicating only limited biosynthesis de novo therein. In leaves, vitamin B1 content is negatively correlated with THIC and THI1 expression levels, suggesting post-transcriptional regulation of THIC by the riboswitch present in the 3'-UTR of the THIC mRNA and regulation of THI1 by promoter activity or alternative post-transcriptional mechanisms.

Indexed as

Chromatography, High Pressure LiquidManihotOrgan SpecificityPlant LeavesPlant RootsThiamineThiamineCassavacropdiversityriboswitchvitamersvitamin B1

Identifiers

PMID28859374
PMCPMC5853225
OpenAlexW2648999162

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.