Evidence map›Paper›PMID 28859111›Full record

ArticlePloS one2017

Geographical variations in bacterial communities associated with soft coral Scleronephthya gracillimum.

Seonock Woo, Shan-Hua Yang, Hsing-Ju Chen, Yu-Fang Tseng, Sung-Jin Hwang, Stephane De Palmas, Vianney Denis, Yukimitsu Imahara, Fumihito Iwase, Seungshic Yum and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  7. Characteristics of The Bleached Microbiome of The Generalist CoralIntegrative organismal biology (Oxford, England) · 2023
    Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 3 countries.

Seonock WooKorea Institute of Ocean Science & Technology, Geoje, Republic of Korea.
Shan-Hua YangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Hsing-Ju ChenBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Yu-Fang TsengBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Sung-Jin HwangDepartment of Eco-Biological Science, Woosuk University, Jincheon, Republic of Korea.
Stephane De PalmasBiodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan.
Vianney DenisInstitute of Oceanography, National Taiwan University, Taipei, Taiwan.
Yukimitsu ImaharaWakayama Laboratory, Biological Institute on Kuroshio, Wakayama City, Wakayama, Japan.
Fumihito IwaseShikoku Marine Life Laboratory, Otsuki-Town, Kochi, Japan.
Seungshic YumKorea Institute of Ocean Science & Technology, Geoje, Republic of Korea.
Sen-Lin TangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Biodiversity Research Center, Academia Sinica · TWKorea Institute of Ocean Science and Technology · KRNational Taiwan Normal University · TWNational Taiwan University · TWShikoku (Japan) · JPWakayama University · JPWoosuk University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Environmental impacts can alter relationships between a coral and its symbiotic microbial community. Furthermore, changes in the microbial community associated with increased seawater temperatures can cause opportunistic infections, coral disease and death. Interactions between soft corals and their associated microbes are not well understood. The species Scleronephthya gracillimum is distributed in tropical to temperate zones in coral assemblages along the Kuroshio Current region. In this study we collected S. gracillimum from various sites at different latitudes, and compared composition of their bacterial communities using Next Generation Sequencing. Coral samples from six geographically distinct areas (two sites each in Taiwan, Japan, and Korea) had considerable variation in their associated bacterial communities and diversity. Endozoicimonaceae was the dominant group in corals from Korea and Japan, whereas Mycoplasma was dominant in corals from Taiwan corals. Interestingly, the latter corals had lower relative abundance of Endozoicimonaceae, but greater diversity. These biogeographic differences in bacterial composition may have been due to varying environmental conditions among study locations, or because of host responses to prevailing environmental conditions. This study provided a baseline for future studies of soft coral microbiomes, and assessment of functions of host metabolites and soft coral holobionts.

Indexed as

AnimalsAnthozoaBacteriaEnvironmental MonitoringGeographyHigh-Throughput Nucleotide SequencingJapanMycoplasmaRepublic of KoreaRNA, Ribosomal, 16SSeawaterSymbiosisTaiwanRNA, Ribosomal, 16S

Identifiers

PMID28859111
PMCPMC5578639
OpenAlexW2752782294

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.