Evidence map›Paper›PMID 28857552›Full record

ArticleBiochemistry2018

Precision Electrophile Tagging in Caenorhabditis elegans.

Marcus J C Long, Daniel A Urul, Shivansh Chawla, Hong-Yu Lin, Yi Zhao, Joseph A Haegele, Yiran Wang, Yimon Aye

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Interrogating Precision Electrophile Signaling.Trends in biochemical sciences · 2019
    Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Getting the Message? Native Reactive Electrophiles Pass Two Out of Three Thresholds to be Bona Fide Signaling Mediators.BioEssays : news and reviews in molecular, cellular and developmental biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Marcus J C LongDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Daniel A UrulDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Shivansh ChawlaDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Hong-Yu LinDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Yi ZhaoDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Joseph A HaegeleDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Yiran WangDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Yimon AyeDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.ORCID 0000-0002-1256-4159
Cornell University · US

Funding

CHEMISTRY OF BIOLOGICAL SYSTEMST32GM008500 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIN, HENING · 1996 to 2020
$5.4M
NIGMS NIH HHS T32 GM008500
6 · The paper itself

Abstract

Adduction of an electrophile to privileged sensor proteins and the resulting phenotypically dominant responses are increasingly appreciated as being essential for metazoan health. Functional similarities between the biological electrophiles and electrophilic pharmacophores commonly found in covalent drugs further fortify the translational relevance of these small-molecule signals. Genetically encodable or small-molecule-based fluorescent reporters and redox proteomics have revolutionized the observation and profiling of cellular redox states and electrophile-sensor proteins, respectively. However, precision mapping between specific redox-modified targets and specific responses has only recently begun to be addressed, and systems tractable to both genetic manipulation and on-target redox signaling in vivo remain largely limited. Here we engineer transgenic Caenorhabditis elegans expressing functional HaloTagged fusion proteins and use this system to develop a generalizable light-controlled approach to tagging a prototypical electrophile-sensor protein with native electrophiles in vivo. The method circumvents issues associated with low uptake/distribution and toxicity/promiscuity. Given the validated success of C. elegans in aging studies, this optimized platform offers a new lens with which to scrutinize how on-target electrophile signaling influences redox-dependent life span regulation.

Indexed as

AldehydesAnimalsAnimals, Genetically ModifiedBacterial ProteinsCaenorhabditis elegansCaenorhabditis elegans ProteinsElectrochemistryHydrolasesKelch-Like ECH-Associated Protein 1LongevityLuminescent ProteinsOxidation-ReductionPhotochemistryProtein Processing, Post-TranslationalRecombinant Fusion ProteinsRed Fluorescent ProteinAldehydesBacterial ProteinsCaenorhabditis elegans Proteinshaloalkane dehalogenaseHydrolasesKEAP1 protein, humanKelch-Like ECH-Associated Protein 1Luminescent ProteinsRecombinant Fusion ProteinsRed Fluorescent Proteintert-4-hydroxy-2-nonenal

Identifiers

PMID28857552
PMCPMC5770885
OpenAlexW2752904899

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.