Evidence map›Paper›PMID 28856738›Full record

ReviewImmunological reviews2017

Gut microbiota: Role in pathogen colonization, immune responses, and inflammatory disease.

Joseph M Pickard, Melody Y Zeng, Roberta Caruso, Gabriel Núñez

Registry-linked trialAbstract readReview
In one paragraph

Review in Immunological reviews, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04989374 (Regulation of Vitamin D Metabolism by Washed Microbiota Transplantation in Patients With Inflammatory Bowel Disease), which is not on this map. Cited by 976 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
976citing papers in PubMed, 6 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04989374 unknown statusnot on this map

Regulation of Vitamin D Metabolism by Washed Microbiota Transplantation in Patients With Inflammatory Bowel Disease

TypeobservationalSponsorThe Second Hospital of Nanjing Medical UniversityRan2016 to 2021Enrolled200ConditionsIBD
3 · Its place in the literature

Who cites it

976 citing papers in PubMed, 6 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Worldwide research trends on theFrontiers in immunology · 2026
    Pooled it
  4. Pooled it
  5. Meta-Analysis of the Gut Microbiome: An African American Representation.International journal of environmental research and public health · 2025
    Pooled it
  6. Pooled it
  7. Trial
  8. Trial
  9. Gut microbes · 2026
    Article
  10. The OMMGut microbes · 2026
    Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
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  20. Review

916 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Joseph M PickardDepartment of Pathology and Comprehensive Cancer Center, The University of Michigan Medical School, Ann Arbor, MI, USA.
Melody Y ZengDepartment of Pathology and Comprehensive Cancer Center, The University of Michigan Medical School, Ann Arbor, MI, USA.
Roberta CarusoDepartment of Pathology and Comprehensive Cancer Center, The University of Michigan Medical School, Ann Arbor, MI, USA.
Gabriel NúñezDepartment of Pathology and Comprehensive Cancer Center, The University of Michigan Medical School, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-6529-2695

Funding

University of Michigan Center for Gastrointestinal ResearchP30DK034933 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OWYANG, CHUNG · 1986 to 2021
$22.5M
Lung Immunopathology Training Stipend SupplementT32HL007517 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUKACS, NICHOLAS W · 1985 to 2022
$6.1M
Nod2: A Susceptibility Gene for Crohn's DiseaseR01DK061707 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NUNEZ, GABRIEL · 2002 to 2017
$4.7M
Role of Immunity and the Microbiota in Enteropathogenic E. coli EradicationR01DK095782 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NUNEZ, GABRIEL · 2013 to 2022
$3.6M
Training in Basic and Translational Digestive SciencesT32DK094775 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI JOHN Y KAO, LINDA C. SAMUELSON · 2012 to 2026
$3.6M
The Role of Inflammasomes in Mucosal Immunity to Intestinal Bacterial PathogensR01DK091191 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NUNEZ, GABRIEL · 2010 to 2019
$3.1M
NHLBI NIH HHS T32 HL007517NIDDK NIH HHS P30 DK034933NIDDK NIH HHS R01 DK061707NIDDK NIH HHS R01 DK091191NIDDK NIH HHS R01 DK095782NIDDK NIH HHS T32 DK094775
6 · The paper itself

Abstract

The intestinal tract of mammals is colonized by a large number of microorganisms including trillions of bacteria that are referred to collectively as the gut microbiota. These indigenous microorganisms have co-evolved with the host in a symbiotic relationship. In addition to metabolic benefits, symbiotic bacteria provide the host with several functions that promote immune homeostasis, immune responses, and protection against pathogen colonization. The ability of symbiotic bacteria to inhibit pathogen colonization is mediated via several mechanisms including direct killing, competition for limited nutrients, and enhancement of immune responses. Pathogens have evolved strategies to promote their replication in the presence of the gut microbiota. Perturbation of the gut microbiota structure by environmental and genetic factors increases the risk of pathogen infection, promotes the overgrowth of harmful pathobionts, and the development of inflammatory disease. Understanding the interaction of the microbiota with pathogens and the immune system will provide critical insight into the pathogenesis of disease and the development of strategies to prevent and treat inflammatory disease.

Indexed as

ImmunityAnimalsDysbiosisGastrointestinal MicrobiomeHomeostasisHumansInflammationInflammatory Bowel DiseasesIntestinal MucosaSymbiosisbacterialcolonization resistancegut microbiotainflammatory bowel diseasemucosa

Identifiers

PMID28856738
PMCPMC5657496

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.