Evidence map›Paper›PMID 28856455›Full record

ArticleAntonie van Leeuwenhoek2018

Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.

Ainsley C Nicholson, Christopher A Gulvik, Anne M Whitney, Ben W Humrighouse, James Graziano, Brian Emery, Melissa Bell, Vladimir Loparev, Phalasy Juieng, Jarrett Gartin and 5 more

Abstract read
In one paragraph

Article in Antonie van Leeuwenhoek, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Review
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  15. Severe pneumonia caused byAmerican journal of translational research · 2024
    Article
  16. Review
  17. Validation of 16S rRNA and CompleteInternational journal of molecular sciences · 2023
    Article
  18. Article
  19. Natural occurrences and characterization ofFrontiers in cellular and infection microbiology · 2023
    Article
  20. Microbiological Characterization and Clinical Facets ofInfection and drug resistance · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Ainsley C NicholsonSpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA. agn0@cdc.gov.
Christopher A GulvikSpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA.
Anne M WhitneySpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA.
Ben W HumrighouseSpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA.
James GrazianoSpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA.
Brian EmerySpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA.
Melissa BellSpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA.
Vladimir LoparevDivision of Scientific Resources, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA.
Phalasy JuiengDivision of Scientific Resources, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA.
Jarrett GartinSpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA.
Chantal BizetMicrobiology Department, Institut Pasteur, Collection de L'Institut Pasteur (CIP), Paris, France.
Dominique ClermontMicrobiology Department, Institut Pasteur, Collection de L'Institut Pasteur (CIP), Paris, France.
Alexis CriscuoloInstitut Pasteur - Bioinformatics and Biostatistics Hub - C3BI, USR 3756 IP CNRS, Paris, France.
Sylvain BrisseMicrobial Evolutionary Genomics, Institut Pasteur, Paris, France.
John R McQuistonSpecial Bacteriology Reference Laboratory, Bacterial Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA.

Funding

CDC HHS Advanced Molecular Detection (AMD) initiativeInstitut Pasteur ANR-10-LABX-62-IBEIDIntramural CDC HHS CC999999
6 · The paper itself

Abstract

The genus Elizabethkingia is genetically heterogeneous, and the phenotypic similarities between recognized species pose challenges in correct identification of clinically derived isolates. In addition to the type species Elizabethkingia meningoseptica, and more recently proposed Elizabethkingia miricola, Elizabethkingia anophelis and Elizabethkingia endophytica, four genomospecies have long been recognized. By comparing historic DNA-DNA hybridization results with whole genome sequences, optical maps, and MALDI-TOF mass spectra on a large and diverse set of strains, we propose a comprehensive taxonomic revision of this genus. Genomospecies 1 and 2 contain the type strains E. anophelis and E. miricola, respectively. Genomospecies 3 and 4 are herein proposed as novel species named as Elizabethkingia bruuniana sp. nov. (type strain, G0146

Indexed as

Genome, BacterialGenomicsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationWhole Genome SequencingBacterial Typing TechniquesComputational BiologyDNA, BacterialDNA Barcoding, TaxonomicEvolution, MolecularFlavobacteriaceaeNucleic Acid HybridizationPhenotypePhylogenyDNA, BacterialAAIANIElizabethkingiaMALDI-TOFSNPsTaxonomy

Identifiers

PMID28856455
PMCPMC5862389

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.