Evidence map›Paper›PMID 28856239›Full record

ArticleeNeuro

Histone Hypervariants H2A.Z.1 and H2A.Z.2 Play Independent and Context-Specific Roles in Neuronal Activity-Induced Transcription of

Carissa J Dunn, Pushpita Sarkar, Emma R Bailey, Shannon Farris, Meilan Zhao, James M Ward, Serena M Dudek, Ramendra N Saha

Open access · goldAbstract read
In one paragraph

Article in eNeuro. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 59 citations in OpenAlex.

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  10. Role of the histone variant H2A.Z.1 in memory, transcription, and alternative splicing is mediated by lysine modification.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Carissa J DunnMolecular and Cell Biology Unit, School of Natural Sciences, University of California at Merced, Merced, CA 95343.
Pushpita SarkarMolecular and Cell Biology Unit, School of Natural Sciences, University of California at Merced, Merced, CA 95343.
Emma R BaileyLaboratory of Neurobiology, NIEHS, NIH, Research Triangle Park, NC 27709.
Shannon FarrisLaboratory of Neurobiology, NIEHS, NIH, Research Triangle Park, NC 27709.ORCID 0000-0003-4473-1684
Meilan ZhaoLaboratory of Neurobiology, NIEHS, NIH, Research Triangle Park, NC 27709.
James M WardIntegrative Bioinformatics Support Group, NIEHS, NIH, Research Triangle Park, NC 27709.ORCID 0000-0002-9510-2848
Serena M DudekLaboratory of Neurobiology, NIEHS, NIH, Research Triangle Park, NC 27709.ORCID 0000-0003-4094-8368
Ramendra N SahaMolecular and Cell Biology Unit, School of Natural Sciences, University of California at Merced, Merced, CA 95343.ORCID 0000-0002-5494-2584
Research Triangle Park Foundation · USUniversity of California, Merced · USNational Institute of Environmental Health Sciences · US

Funding

Mechanisms Of Synaptic Plasticity In The Adult And Developing Nervous SystemZIAES100221 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI DUDEK, SERENA M · 2009 to 2025
$47.4M
Synaptic Plasticity In The Adult And Developing NSZ01ES100221 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI DUDEK, SERENA M · 2002 to 2008
$3.5M
Role of H2A.z isoforms in neuronal transcription and synaptic plasticity.R00MH096941 · NIMH · UNIVERSITY OF CALIFORNIA, MERCED · PI SAHA, RAMENDRA N · 2014 to 2016
$747k
Intramural NIH HHS Z01 ES100221NIMH NIH HHS R00 MH096941
6 · The paper itself

Abstract

The histone variant H2A.Z is an essential and conserved regulator of eukaryotic gene transcription. However, the exact role of this histone in the transcriptional process remains perplexing. In vertebrates, H2A.Z has two hypervariants, H2A.Z.1 and H2A.Z.2, that have almost identical sequences except for three amino acid residues. Due to such similarity, functional specificity of these hypervariants in neurobiological processes, if any, remain largely unknown. In this study with dissociated rat cortical neurons, we asked if H2A.Z hypervariants have distinct functions in regulating basal and activity-induced gene transcription. Hypervariant-specific RNAi and microarray analyses revealed that H2A.Z.1 and H2A.Z.2 regulate basal expression of largely nonoverlapping gene sets, including genes that code for several synaptic proteins. In response to neuronal activity, rapid transcription of our model gene

Indexed as

AnimalsCells, CulturedCerebral CortexCytoskeletal ProteinsEpigenesis, GeneticGene Expression RegulationGreen Fluorescent ProteinsHistonesNerve Tissue ProteinsNeuronsNucleosomesRats, Sprague-DawleyRNA Polymerase IISynaptic TransmissionTranscription, Geneticactivity regulated cytoskeletal-associated proteinCytoskeletal ProteinsGreen Fluorescent Proteinshistone H2A.F-ZHistonesNerve Tissue ProteinsNucleosomesRNA Polymerase IIArcepigeneticsH2A.ZH2A.Z.1H2A.Z.2histone

Identifiers

PMID28856239
PMCPMC5569379
OpenAlexW2745426943

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.