Evidence map›Paper›PMID 28855684›Full record

ArticleScientific reports2017

Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS.

Anna Maria D'Erchia, Angela Gallo, Caterina Manzari, Susanna Raho, David S Horner, Matteo Chiara, Alessio Valletti, Italia Aiello, Francesca Mastropasqua, Loredana Ciaccia and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed, 1 pooled it
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 1 synthesis or guideline pooled it, 137 citations in OpenAlex.

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  17. Drug repurposing in amyotrophic lateral sclerosis (ALS).Expert opinion on drug discovery · 2025
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30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Anna Maria D'ErchiaDepartment of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Via Orabona 4, 70126, Bari, Italy.
Angela GalloDepartment of Pediatric Oncohaematology, Bambino Gesù Children's Hospital IRCCS, Piazza S. Onofrio 4, 00165, Rome, Italy.
Caterina ManzariInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies (IBIOM), National Research Council, Via Amendola 165/A, 70126, Bari, Italy.
Susanna RahoDepartment of Pediatric Oncohaematology, Bambino Gesù Children's Hospital IRCCS, Piazza S. Onofrio 4, 00165, Rome, Italy.
David S HornerDepartment of Biosciences, University of Milan, Via Celoria 26, 20133, Milan, Italy.
Matteo ChiaraInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies (IBIOM), National Research Council, Via Amendola 165/A, 70126, Bari, Italy.
Alessio VallettiInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies (IBIOM), National Research Council, Via Amendola 165/A, 70126, Bari, Italy.ORCID http://orcid.org/0000-0002-6772-1211
Italia AielloInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies (IBIOM), National Research Council, Via Amendola 165/A, 70126, Bari, Italy.
Francesca MastropasquaDepartment of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Via Orabona 4, 70126, Bari, Italy.
Loredana CiacciaDepartment of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Via Orabona 4, 70126, Bari, Italy.
Franco LocatelliDepartment of Pediatric Oncohaematology, Bambino Gesù Children's Hospital IRCCS, Piazza S. Onofrio 4, 00165, Rome, Italy.
Francesco PisaniDepartment of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Via Orabona 4, 70126, Bari, Italy.
Grazia Paola NicchiaDepartment of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Via Orabona 4, 70126, Bari, Italy.
Maria SveltoDepartment of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Via Orabona 4, 70126, Bari, Italy.
Graziano PesoleDepartment of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Via Orabona 4, 70126, Bari, Italy. graziano.pesole@uniba.it.ORCID http://orcid.org/0000-0003-3663-0859
Ernesto PicardiDepartment of Biosciences, Biotechnology and Biopharmaceutics, University of Bari, Via Orabona 4, 70126, Bari, Italy. ernesto.picardi@uniba.it.ORCID http://orcid.org/0000-0002-6549-0114
Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies · ITUniversity of Bari Aldo Moro · ITBambino Gesù Children's Hospital · ITIstituto Nazionale Biostrutture e Biosistemi · ITUniversity of Milan · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ALS is a devastating and debilitating human disease characterized by the progressive death of upper and lower motor neurons. Although much effort has been made to elucidate molecular determinants underlying the onset and progression of the disorder, the causes of ALS remain largely unknown. In the present work, we have deeply sequenced whole transcriptome from spinal cord ventral horns of post-mortem ALS human donors affected by the sporadic form of the disease (which comprises ~90% of the cases but which is less investigated than the inherited form of the disease). We observe 1160 deregulated genes including 18 miRNAs and show that down regulated genes are mainly of neuronal derivation while up regulated genes have glial origin and tend to be involved in neuroinflammation or cell death. Remarkably, we find strong deregulation of SNAP25 and STX1B at both mRNA and protein levels suggesting impaired synaptic function through SNAP25 reduction as a possible cause of calcium elevation and glutamate excitotoxicity. We also note aberrant alternative splicing but not disrupted RNA editing.

Indexed as

TranscriptomeAmyotrophic Lateral SclerosisAutopsyCalciumCell DeathGene Expression RegulationGlutamic AcidHigh-Throughput Nucleotide SequencingHumansMaleMicroRNAsMiddle AgedMotor NeuronsNerve Tissue ProteinsNeurogliaRNA, MessengerCalciumGlutamic AcidMicroRNAsNerve Tissue ProteinsRNA, MessengerSNAP25 protein, humanSTX1B protein, humanSynaptosomal-Associated Protein 25Syntaxin 1

Identifiers

PMID28855684
PMCPMC5577269
OpenAlexW2750196105

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.