Evidence map›Paper›PMID 28855633›Full record

ArticleScientific reports2017

First genome report and analysis of chicken H7N9 influenza viruses with poly-basic amino acids insertion in the hemagglutinin cleavage site.

Jidang Chen, Jipei Zhang, Wanjun Zhu, Yishan Zhang, Hualong Tan, Minfang Liu, Mingsheng Cai, Jiaren Shen, Hinh Ly, Jianhong Chen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Jidang ChenSchool of Life Science and Engineering, Foshan University, Foshan, China.
Jipei ZhangSchool of Life Science and Engineering, Foshan University, Foshan, China.
Wanjun ZhuDepartment of Veterinary & Biomedical Sciences, College of Veterinary Medicine, University of Minnesota, Twin Cities, Minnesota, USA.
Yishan ZhangSchool of Life Science and Engineering, Foshan University, Foshan, China.
Hualong TanSchool of Life Science and Engineering, Foshan University, Foshan, China.
Minfang LiuSchool of Life Science and Engineering, Foshan University, Foshan, China.
Mingsheng CaiDepartment of Pathogenic Biology and Immunology, Sino-French Hoffmann Institute, School of Basic Medical Science, Guangzhou Medical University, Guangzhou, Guangdong, China.
Jiaren ShenShanghai Municipal Center for Disease Control and Prevention (SCDC), Shanghai, China.
Hinh LyDepartment of Veterinary & Biomedical Sciences, College of Veterinary Medicine, University of Minnesota, Twin Cities, Minnesota, USA. hly@umn.edu.
Jianhong ChenSchool of Life Science and Engineering, Foshan University, Foshan, China. jianhongchen.fsu@gmail.com.
Foshan University · CNUniversity of Minnesota · USGuangzhou Medical University · CNShanghai Municipal Center For Disease Control Prevention · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the full-length sequence of two chicken source influenza A (H7N9) viruses found in Guangdong live poultry market (LPM) during the most recent wave of human infections (from October 2016 to the present time). These viruses carry insertion of poly-basic amino acids (KGKRTAR/G) at the protease cleavage site of the HA protein, which were previously found in the highly pathogenic (HP) human influenza A (H7N9) [IAV(H7N9)] strains. Phylogenetic analysis of these two novel avian influenza viruses (AIVs) suggested that their genomes reassorted between the Yangtze River Delta (YRD) and Pearl River Delta (PRD) clades. Molecular clock analysis indicated that they emerged several months before the HP human strains. Collectively, our results suggest that IAV(H7N9) viruses evolve in chickens through antigenic drift to include a signature HP sequence in the HA gene, which highlights challenges in risk assessment and public health management of IAV(H7N9) infections at the human-animal interface.

Indexed as

Mutagenesis, InsertionalAmino Acids, BasicAnimalsChickensEvolution, MolecularGenome, ViralHemagglutinin Glycoproteins, Influenza VirusInfluenza A Virus, H7N9 SubtypeInfluenza in BirdsPhylogenyReassortant VirusesWhole Genome SequencingAmino Acids, Basichemagglutinin, avian influenza A virusHemagglutinin Glycoproteins, Influenza Virus

Identifiers

PMID28855633
PMCPMC5577273
OpenAlexW2746437288

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.