Evidence map›Paper›PMID 28855631›Full record

ArticleScientific reports2017

Functional analysis of a novel, thyroglobulin-embedded microRNA gene deregulated in papillary thyroid carcinoma.

Monika Kolanowska, Anna Wójcicka, Anna Kubiak, Michał Świerniak, Marta Kotlarek, Monika Maciąg, Paweł Gaj, Łukasz Koperski, Barbara Górnicka, Krystian Jażdżewski

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Monika KolanowskaGenomic Medicine, Medical University of Warsaw, Warsaw, Poland.
Anna WójcickaGenomic Medicine, Medical University of Warsaw, Warsaw, Poland.
Anna KubiakGenomic Medicine, Medical University of Warsaw, Warsaw, Poland.
Michał ŚwierniakGenomic Medicine, Medical University of Warsaw, Warsaw, Poland.
Marta KotlarekGenomic Medicine, Medical University of Warsaw, Warsaw, Poland.
Monika MaciągGenomic Medicine, Medical University of Warsaw, Warsaw, Poland.
Paweł GajLaboratory of Human Cancer Genetics, Centre of New Technologies, CENT, University of Warsaw, Warsaw, Poland.
Łukasz KoperskiDepartment of Pathology, Medical University of Warsaw, Warsaw, Poland.
Barbara GórnickaDepartment of Pathology, Medical University of Warsaw, Warsaw, Poland.
Krystian JażdżewskiGenomic Medicine, Medical University of Warsaw, Warsaw, Poland. kjazdzewski@wum.edu.pl.ORCID 0000-0001-5327-6332
Medical University of Warsaw · PLUniversity of Warsaw · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs, non-coding regulators of gene expression, are known culprits of thyroid cancer. Using next-generation sequencing, we identified a novel microRNA gene, encoded within an important thyroid regulator - thyroglobulin, and analyzed its functionality in the thyroid gland. In vitro and in silico analyses proved that the novel miR-TG is processed from the precursor, and co-expressed with thyroglobulin. Both genes are specific for thyroid tissue and downregulated in papillary thyroid carcinoma by 44% (p = 0.04) and 48% (p = 0.001), respectively. Putative target genes for miR-TG were identified using in silico tools, which pinpointed MAP4K4, an oncogene upregulated in thyroid cancer. Analysis of transcriptome by RNA-seq revealed that overexpression of miR-TG in PTC-derived cell line led to downregulation of several genes, including MAP4K4 (fold change 0,82; p = 0.036). The finding was confirmed by SQ-PCR (fold change 071; p = 0.004). Direct interaction between miR-TG and MAP4K4 was confirmed in the luciferase assay (p = 0.0006). Functional studies showed increase proliferation in K1 cell line transfected with miR-TG. We propose that in normal thyroid miR-TG plays a fine-tuning effect on the maintenance of MAPK pathway, inhibiting the expression of miR's target MAP4K4. This regulation is disturbed in cancer due to downregulation of the novel, thyroglobulin-embedded microRNA, characterized in this study.

Indexed as

Down-Regulation3' Untranslated RegionsCell Line, TumorComputer SimulationGene Expression Regulation, NeoplasticHeLa CellsHigh-Throughput Nucleotide SequencingHumansIntracellular Signaling Peptides and ProteinsMicroRNAsOrgan SpecificityProtein Serine-Threonine KinasesSequence Analysis, RNAThyroglobulinThyroid Cancer, PapillaryThyroid Gland3' Untranslated RegionsIntracellular Signaling Peptides and ProteinsMAP4K4 protein, humanMicroRNAsProtein Serine-Threonine KinasesTG protein, humanThyroglobulin

Identifiers

PMID28855631
PMCPMC5577171
OpenAlexW2749405753

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.