Evidence map›Paper›PMID 28854703›Full record

ArticleHuman molecular genetics2017

Expression quantitative trait loci (eQTLs) in human placentas suggest developmental origins of complex diseases.

Shouneng Peng, Maya A Deyssenroth, Antonio F Di Narzo, Luca Lambertini, Carmen J Marsit, Jia Chen, Ke Hao

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 8 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 8 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 8 syntheses or guidelines pooled it, 69 citations in OpenAlex.

  1. Pooled it
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  12. Association ofInternational journal of molecular sciences · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Placental Origins of Preeclampsia: Insights from Multi-Omic Studies.International journal of molecular sciences · 2024
    Review
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Shouneng PengDepartment of Genetics and Genomic Sciences.
Maya A DeyssenrothDepartment of Environmental Medicine and Public Health.
Antonio F Di NarzoDepartment of Genetics and Genomic Sciences.
Luca LambertiniDepartment of Environmental Medicine and Public Health.
Carmen J MarsitDepartment of Environmental Health, Emory University, Atlanta, GA 30322, USA.
Jia ChenDepartment of Environmental Medicine and Public Health.
Ke HaoDepartment of Genetics and Genomic Sciences.
Genomics (United Kingdom) · GBIcahn School of Medicine at Mount Sinai · USEmory University · US

Funding

The Mount Sinai Transdisciplinary Center on Early Environmental ExposuresP30ES023515 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Maria Jose Rosa · 2014 to 2026
$21.3M
Research Training Program in Pediatric ExposomicsT32HD049311 · NICHD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KECIA Nicole CARROLL, Robert O Wright · 2007 to 2026
$7.4M
Project 3: Placental Biomarkers of Exposure and Outcome (Marsit)P01ES022832 · NIEHS · DARTMOUTH COLLEGE · PI MURRAY, CAROLYN J · 2013 to 2018
$4.7M
Environment, Imprinting, and NeurodevelopmentR01ES022223 · NIEHS · EMORY UNIVERSITY · PI CHEN, JIA, MARSIT, CARMEN JOSEPH · 2013 to 2017
$4.3M
Epigenetics in Neurodevelopment and Mental HealthR01MH094609 · NIMH · DARTMOUTH COLLEGE · PI MARSIT, CARMEN JOSEPH · 2011 to 2015
$2.3M
Enriching the Rhode Island Child Health StudyR24ES028507 · NIEHS · EMORY UNIVERSITY · PI Carmen Joseph Marsit, LAURA R STROUD · 2017 to 2026
$2.3M
MicroRNA, Environmental Exposures and Newborn OutcomesR01ES025145 · NIEHS · EMORY UNIVERSITY · PI KOESTLER, DEVIN CHARLES, MARSIT, CARMEN JOSEPH · 2016 to 2019
$1.8M
Novel Assay System and Analysis Algorithm in Detecting RNA Editing Events and Linked Splicing IsoformsR41DA042464 · NIDA · CELETRIX, LLC · PI HAO, KE · 2016 to 2016
$174k
NICHD NIH HHS T32 HD049311NIDA NIH HHS R41 DA042464NIEHS NIH HHS P01 ES022832NIEHS NIH HHS P30 ES023515NIEHS NIH HHS R01 ES022223NIEHS NIH HHS R01 ES025145NIEHS NIH HHS R24 ES028507NIMH NIH HHS R01 MH094609
6 · The paper itself

Abstract

Epidemiologic studies support that at least part of the risk of chronic diseases in childhood and even adulthood may have an in utero origin, and the placenta is a key organ that plays a pivotal role in fetal growth and development. The transcriptomes of 159 human placenta tissues were profiled by genome-wide RNA sequencing (Illumina High-Seq 2500), and linked to fetal genotypes assessed by a high density single nucleotide polymorphism (SNP) genotyping array (Illumina MegaEx). Expression quantitative trait loci (eQTLs) across all annotated transcripts were mapped and examined for enrichment for disease susceptibility loci annotated in the genome-wide association studies (GWAS) catalog. We discovered 3218 cis- and 35 trans-eQTLs at ≤10% false discovery rate in human placentas. Among the 16 439 known disease loci of genome-wide significance, 835 were placental eSNPs (enrichment fold = 1.68, P = 7.41e-42). Stronger effect sizes were observed between GWAS SNPs and gene expression in placentas than what has been reported in other tissues, such as the correlation between asthma risk allele, rs7216389-T and Gasdermin-B (GSDMB) in placenta (r2=27%) versus lung (r2=6%). Finally, our results suggest the placental eQTLs may mediate the function of GWAS loci on postnatal disease susceptibility. Results suggest that transcripts in placenta are under tight genetic control, and that placental gene networks may influence postnatal risk of multiple human diseases lending support for the Developmental Origins of Health and Disease.

Indexed as

AllelesChromosome MappingFemaleGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeHumansMalePlacentaPolymorphism, Single NucleotidePregnancyQuantitative Trait LociSequence Analysis, RNA

Identifiers

PMID28854703
PMCPMC5886245
OpenAlexW2732904266

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.