Evidence map›Paper›PMID 28854628›Full record

ArticleGenome biology and evolution2017

Genomic Epidemiology of NDM-1-Encoding Plasmids in Latin American Clinical Isolates Reveals Insights into the Evolution of Multidrug Resistance.

Ricaurte Alejandro Marquez-Ortiz, Leanne Haggerty, Narda Olarte, Carolina Duarte, Ulises Garza-Ramos, Jesus Silva-Sanchez, Betsy E Castro, Eby M Sim, Mauricio Beltran, María V Moncada and 6 more

Abstract read
In one paragraph

Article in Genome biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. The Emergence ofAntibiotics (Basel, Switzerland) · 2025
    Article
  2. Review
  3. Emergence and dissemination ofMicrobiology spectrum · 2025
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  4. New Insights inAntibiotics (Basel, Switzerland) · 2025
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  5. Article
  6. Analysis ofAntimicrobial agents and chemotherapy · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Co-integrate Col3mMicrobiology spectrum · 2023
    Article
  11. Detection of NDM-1 and OXA-10 Co-ProducingInfection and drug resistance · 2023
    Article
  12. Complete genetic characterization of carbapenem-resistantFrontiers in cellular and infection microbiology · 2023
    Article
  13. Article
  14. Article
  15. Within patient genetic diversity of blaScientific reports · 2021
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Ricaurte Alejandro Marquez-OrtizBacterial Molecular Genetics Laboratory, Universidad El Bosque, Bogotá, D.C., Colombia.
Leanne HaggertyThe ithree Institute, University of Technology Sydney, New South Wales, Australia.
Narda OlarteEl Tunal Hospital E.S.E, Bogotá, Colombia.
Carolina DuarteGrupo de Microbiología, Instituto Nacional de Salud, Bogotá, Colombia.
Ulises Garza-RamosInstituto Nacional de Salud Pública (INSP), CISEI, Cuernavaca, Morelos, México.
Jesus Silva-SanchezInstituto Nacional de Salud Pública (INSP), CISEI, Cuernavaca, Morelos, México.
Betsy E CastroBacterial Molecular Genetics Laboratory, Universidad El Bosque, Bogotá, D.C., Colombia.
Eby M SimThe ithree Institute, University of Technology Sydney, New South Wales, Australia.
Mauricio BeltranGrupo de Microbiología, Instituto Nacional de Salud, Bogotá, Colombia.
María V MoncadaBacterial Molecular Genetics Laboratory, Universidad El Bosque, Bogotá, D.C., Colombia.
Alberto ValderramaEl Tunal Hospital E.S.E, Bogotá, Colombia.
Jaime E CastellanosGrupo de Patogénesis Infecciosa, Universidad Nacional de Colombia, Bogotá, D.C., Colombia.
Ian G CharlesThe ithree Institute, University of Technology Sydney, New South Wales, Australia.
Natasha VanegasBacterial Molecular Genetics Laboratory, Universidad El Bosque, Bogotá, D.C., Colombia.
Javier Escobar-PerezBacterial Molecular Genetics Laboratory, Universidad El Bosque, Bogotá, D.C., Colombia.
Nicola K PettyThe ithree Institute, University of Technology Sydney, New South Wales, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria that produce the broad-spectrum Carbapenem antibiotic New Delhi Metallo-β-lactamase (NDM) place a burden on health care systems worldwide, due to the limited treatment options for infections caused by them and the rapid global spread of this antibiotic resistance mechanism. Although it is believed that the associated resistance gene blaNDM-1 originated in Acinetobacter spp., the role of Enterobacteriaceae in its dissemination remains unclear. In this study, we used whole genome sequencing to investigate the dissemination dynamics of blaNDM-1-positive plasmids in a set of 21 clinical NDM-1-positive isolates from Colombia and Mexico (Providencia rettgeri, Klebsiella pneumoniae, and Acinetobacter baumannii) as well as six representative NDM-1-positive Escherichia coli transconjugants. Additionally, the plasmids from three representative P. rettgeri isolates were sequenced by PacBio sequencing and finished. Our results demonstrate the presence of previously reported plasmids from K. pneumoniae and A. baumannii in different genetic backgrounds and geographically distant locations in Colombia. Three new previously unclassified plasmids were also identified in P. rettgeri from Colombia and Mexico, plus an interesting genetic link between NDM-1-positive P. rettgeri from distant geographic locations (Canada, Mexico, Colombia, and Israel) without any reported epidemiological links was discovered. Finally, we detected a relationship between plasmids present in P. rettgeri and plasmids from A. baumannii and K. pneumoniae. Overall, our findings suggest a Russian doll model for the dissemination of blaNDM-1 in Latin America, with P. rettgeri playing a central role in this process, and reveal new insights into the evolution and dissemination of plasmids carrying such antibiotic resistance genes.

Indexed as

Acinetobacter baumanniiAcinetobacter InfectionsAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasesColombiaDrug Resistance, BacterialEnterobacteriaceaeEnterobacteriaceae InfectionsHumansMexicoPhylogenyPlasmidsAnti-Bacterial AgentsBacterial Proteinsbeta-lactamase NDM-1beta-Lactamasesantibiotic resistancebacterial evolutiongenomicsmetallo-beta-lactamasemobile genetic elementsProvidencia rettgeri

Identifiers

PMID28854628
PMCPMC5554438

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.