Evidence map›Paper›PMID 28854239›Full record

ArticlePloS one2017

Helicobacter pylori sabA gene is associated with iron deficiency anemia in childhood and adolescence.

Seiichi Kato, Takako Osaki, Shigeru Kamiya, Xue-Song Zhang, Martin J Blaser

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

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  12. Cells · 2020
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  13. World journal of gastroenterology · 2019
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  14. World journal of gastroenterology · 2018
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Seiichi KatoDepartment of Pediatrics, Tohoku University School of Medicine, Sendai, Japan.ORCID http://orcid.org/0000-0002-3484-6827
Takako OsakiDepartment of Infectious Diseases, Kyorin University School of Medicine, Mitaka, Japan.
Shigeru KamiyaDepartment of Infectious Diseases, Kyorin University School of Medicine, Mitaka, Japan.
Xue-Song ZhangDepartments of Medicine and Microbiology, New York University School of Medicine, New York, NY, United States of America.
Martin J BlaserDepartments of Medicine and Microbiology, New York University School of Medicine, New York, NY, United States of America.ORCID http://orcid.org/0000-0003-2447-2443
Kyorin University · JPNew York University · US

Funding

MATHEMATICAL MODELS OF H PYLORI GASTRIC COLONIZATIONR01GM063270 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BLASER, MARTIN J · 2000 to 2013
$3.1M
NIGMS NIH HHS R01 GM063270
6 · The paper itself

Abstract

backgroundGastric Helicobacter pylori colonization leads to iron deficiency anemia (IDA), especially in children and adolescents. However the pathogenesis is poorly understood.

objectiveWe sought to identify specific H. pylori genes involved in IDA development, by comparing bacterial genome-wide expression profiling in patients affected or not.

methodsH. pylori were isolated from four children with IDA and four from matched controls without IDA. Based on these isolates, cDNA microarrays under iron-replete or depleted conditions were systematically performed to compare gene expression profiles at the whole genome level. Real-time reverse-transcription (RT-) PCR and protein assays were performed for further assessing the profile differentiation of the identified H. pylori IDA-associated genes.

resultsWe identified 29 and 11 genes with significantly higher or lower expression in the IDA isolates compared to non-IDA isolates, respectively. Especially notable were higher expression of sabA gene encoding sialic acid-binding adhesin in the IDA isolates, which was confirmed by real-time RT-PCR study. Moreover, iron-depletion in vitro led to up-regulation of fecA1 and frpB1 genes and down-regulation of pfr, as predicted. Known iron-regulated genes such as fur, pfr, fecA, and feoB did not significantly differ between both groups. The IDA isolates had significantly higher expression of vacuolating cytotoxin gene vacA than non-IDA isolates, consistent with the results of VacA protein assays. There were no significant differences in bacterial growth value between IDA and non-IDA isolates.

conclusionsIt is likely that H. pylori carrying high expression of sabA causes IDA, especially in children and adolescents who have increased daily iron demand. In addition, it is possible that several host-interactive genes, including vacA, may play a synergistic role for sabA in IDA development.

Indexed as

Gene Expression Regulation, BacterialAdhesins, BacterialAdolescentAnemia, Iron-DeficiencyFemaleHelicobacter InfectionsHelicobacter pyloriHost-Pathogen InteractionsHumansMaleUp-RegulationAdhesins, BacterialSabA protein, Helicobacter pylori

Identifiers

PMID28854239
PMCPMC5576686
OpenAlexW2751406145

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.