Evidence map›Paper›PMID 28852059›Full record

ArticleScientific reports2017

Comparative RNA-Seq Analysis Uncovers a Complex Regulatory Network for Soybean Cyst Nematode Resistance in Wild Soybean (Glycine soja).

Hengyou Zhang, Susanne Kjemtrup-Lovelace, Changbao Li, Yan Luo, Lars P Chen, Bao-Hua Song

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Syncytium Induced by Plant-Parasitic Nematodes.Results and problems in cell differentiation · 2024
    Review
  9. Article
  10. Article
  11. Soybean-SCN Battle: Novel Insight into Soybean's Defense Strategies againstInternational journal of molecular sciences · 2023
    Article
  12. Evaluating the Response ofPlants (Basel, Switzerland) · 2023
    Article
  13. Article
  14. Deciphering the genetic basis of resistance to soybean cyst nematode combining IBD and association mapping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Identifying Soybean Pod Borer (International journal of molecular sciences · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Hengyou ZhangDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Susanne Kjemtrup-LovelaceDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695, USA.
Changbao LiDouble Haploid Optimization Group, Monsanto Company, St. Louis, MO 63167, USA.
Yan LuoDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA.
Lars P ChenBiology Department, University of North Carolina, Chapel Hill, NC 27599, USA.
Bao-Hua SongDepartment of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA. bsong5@uncc.edu.
University of North Carolina at Charlotte · USMonsanto (United States) · USNorth Carolina State University · USUniversity of North Carolina at Chapel Hill · USXishuangbanna Tropical Botanical Garden · CN

Funding

Molecular basis and evolution of complex trait variation with significance in human healthR15GM122029 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI SONG, BAO-HUA · 2016 to 2016
$439k
NIGMS NIH HHS R15 GM122029
6 · The paper itself

Abstract

Soybean cyst nematode (SCN) is the most damaging pest of soybean worldwide. The molecular mechanism of SCN resistance remains largely unknown. We conducted a global RNA-seq comparison between a resistant genotype (S54) and a susceptible genotype (S67) of Glycine soja, the wild progenitor of soybean, to understand its regulatory network in SCN defense. The number of differentially expressed genes (DEGs) in S54 (2,290) was much larger than that in S67 (555). A number of defense-related genes/pathways were significantly induced only in S54, while photosynthesis and several metabolic pathways were affected in both genotypes with SCN infection. These defense-associated DEGs were involved in pathogen recognition, calcium/calmodulin-mediated defense signaling, jasmonic acid (JA)/ethylene (ET) and sialic acid (SA)-involved signaling, the MAPK signaling cascade, and WRKY-involved transcriptional regulation. Our results revealed a comprehensive regulatory network involved in SCN resistance and provided insights into the complex molecular mechanisms of SCN resistance in wild soybean.

Indexed as

Gene Expression Regulation, PlantGene Regulatory NetworksComputational BiologyDisease ResistanceGene Expression ProfilingGene OntologyGlycine maxHigh-Throughput Nucleotide SequencingHost-Parasite InteractionsModels, BiologicalMolecular Sequence AnnotationPlant DiseasesPlant ProteinsSequence Analysis, RNASignal TransductionTranscriptomePlant Proteins

Identifiers

PMID28852059
PMCPMC5575055
OpenAlexW2747130785

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.