Evidence map›Paper›PMID 28851936›Full record

ArticleScientific reports2017

Putrescine independent wound response phenotype is produced by ODC-like RNAi in planarians.

Lucia Cassella, Alessandra Salvetti, Paola Iacopetti, Chiara Ippolito, Claudio Ghezzani, Gregory Gimenez, Eric Ghigo, Leonardo Rossi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  5. PeerJ · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Lucia CassellaDepartment of Clinical and Experimental Medicine, University of Pisa, via Volta 4, 56126, Pisa, Italy.
Alessandra SalvettiDepartment of Clinical and Experimental Medicine, University of Pisa, via Volta 4, 56126, Pisa, Italy.
Paola IacopettiDepartment of Clinical and Experimental Medicine, University of Pisa, via Volta 4, 56126, Pisa, Italy.
Chiara IppolitoDepartment of Clinical and Experimental Medicine, University of Pisa, via Volta 4, 56126, Pisa, Italy.
Claudio GhezzaniDepartment of Clinical and Experimental Medicine, University of Pisa, via Volta 4, 56126, Pisa, Italy.
Gregory GimenezOtago Genomics & Bioinformatics Facility, Department of Biochemistry, University of Otago, PO Box 56, 710 Cumberland Street, Dunedin, 9054, New Zealand.
Eric GhigoCNRS UMR 7278, IRD198, INSERM U1095, APHM, Institut Hospitalier Universitaire Méditerranée-Infection, Aix-Marseille Université, 19-21 Bd Jean Moulin, 13385, Marseille Cedex 05, France.
Leonardo RossiDepartment of Clinical and Experimental Medicine, University of Pisa, via Volta 4, 56126, Pisa, Italy. leoros@biomed.unipi.it.ORCID 0000-0002-1143-8695
University of Pisa · ITCentre National de la Recherche Scientifique · FRUniversity of Otago · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite increasing evidence indicates polyamines as a convergence point for signaling pathways, including cell growth and differentiation, a unifying concept to interpret their role is still missing. The activity of ornithine decarboxylase (ODC), the rate-limiting enzyme in polyamine biosynthesis, is tightly regulated by a complex molecular machinery, and the demonstration of the existence of multiple ODC paralogs, lacking decarboxylation activity, suggests additional layers of complexity to the intricate ODC regulatory pathway. Because of their extraordinary regenerative abilities and abundance of stem cells, planarians have potential to contribute to our understanding of polyamine function in an in vivo context. We undertook a study on ODC function in planarians and we found six planarian ODCs (ODC1-6). Five out of six ODC homologs carry substitutions of key aminoacids for enzymatic activity, which makes them theoretically unable to decarboxylate ornithine. Silencing of ODC5 and 6 produced a complex phenotype, by prompting animals to an aberrant response, following chronic injury without tissue removal. Phenotype is neither rescued by putrescine, nor mimicked by difluoromethylornithine treatment. Moreover, the co-silencing of other genes of the ODC regulatory pathway did not modulate phenotype outcome or severity, thus suggesting that the function/s of these ODC-like proteins might be unrelated to decarboxylase activity and putrescine production.

Indexed as

RNA InterferenceAnimalsCell ProliferationGene Expression Regulation, EnzymologicGene SilencingIn Situ HybridizationOrnithine DecarboxylasePhenotypePlanariansPolyaminesPutrescineRNA, Double-StrandedOrnithine DecarboxylasePolyaminesPutrescineRNA, Double-Stranded

Identifiers

PMID28851936
PMCPMC5574924
OpenAlexW2750259550

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.