Evidence map›Paper›PMID 28851870›Full record

ArticleScientific reports2017

SDE5, a putative RNA export protein, participates in plant innate immunity through a flagellin-dependent signaling pathway in Arabidopsis.

Mohammad Nazim Uddin, Salina Akhter, Rupak Chakraborty, Ji Hyeong Baek, Joon-Yung Cha, Su Jung Park, Hunseung Kang, Woe-Yeon Kim, Sang Yeol Lee, David Mackey and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. RNA-binding proteins orchestrating immunity in plants.The Plant journal : for cell and molecular biology · 2025
    Review
  4. Small RNA-based plant protection against diseases.Frontiers in plant science · 2022
    Review
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Mohammad Nazim UddinCollege of Pharmacy and Research Institute of Pharmaceutical Science, PMBBRC, Gyeongsang National University, Jinju, 660-701, Republic of Korea.
Salina AkhterDivision of Applied Life Sciences (BK21 Plus program), Graduate School of Gyeongsang National University, Jinju, 660-701, Republic of Korea.
Rupak ChakrabortyCollege of Pharmacy and Research Institute of Pharmaceutical Science, PMBBRC, Gyeongsang National University, Jinju, 660-701, Republic of Korea.
Ji Hyeong BaekCollege of Pharmacy and Research Institute of Pharmaceutical Science, PMBBRC, Gyeongsang National University, Jinju, 660-701, Republic of Korea.
Joon-Yung ChaDivision of Applied Life Science (BK21Plus), PMBBRC & IALS, Gyeongsang National University, Jinju, 660-701, Korea.
Su Jung ParkDepartment of Plant Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, 500-757, Korea.
Hunseung KangDepartment of Plant Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, 500-757, Korea.
Woe-Yeon KimDivision of Applied Life Science (BK21Plus), PMBBRC & IALS, Gyeongsang National University, Jinju, 660-701, Korea.
Sang Yeol LeeDivision of Applied Life Sciences (BK21 Plus program), Graduate School of Gyeongsang National University, Jinju, 660-701, Republic of Korea.
David MackeyDepartment of Molecular Genetics, Ohio State University, Columbus, Ohio, 43210, USA. mackey.86@osu.edu.
Min Gab KimCollege of Pharmacy and Research Institute of Pharmaceutical Science, PMBBRC, Gyeongsang National University, Jinju, 660-701, Republic of Korea. mgk1284@gnu.ac.kr.
Gyeongsang National University · KRChonnam National University · KRCotton Research and Development Corporation · AUThe Ohio State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In eukaryotes, RNA silencing, mediated by small interfering RNAs, is an evolutionarily widespread and versatile silencing mechanism that plays an important role in various biological processes. Increasing evidences suggest that various components of RNA silencing pathway are involved in plant defense machinery against microbial pathogens in Arabidopsis thaliana. Here, we show genetic and molecular evidence that Arabidopsis SDE5 is required to generate an effective resistance against the biotrophic bacteria Pseudomonas syringae pv. tomato DC3000 and for susceptibility to the necrotrophic bacteria Erwinia caratovora pv. caratovora. SDE5, encodes a putative mRNA export factor that is indispensable for transgene silencing and the production of trans-acting siRNAs. SDE5 expression is rapidly induced by exogenous application of phytohormone salicylic acid (SA), methyl jasmonate (MeJA), phytopathogenic bacteria, and flagellin. We further report that SDE5 is involved in basal plant defense and mRNA export. Our genetic data suggests that SDE5 and Nonexpressor of PR Gene1 (NPR1) may contribute to the same SA-signaling pathway. However, SDE5 over-expressing transgenic plant exhibits reduced defense responsive phenotype after flagellin treatment. Taken together, these results support the conclusion that SDE5 contributes to plant innate immunity in Arabidopsis.

Indexed as

Immunity, InnateSignal TransductionArabidopsisArabidopsis ProteinsDisease ResistanceFlagellinGene Expression Regulation, PlantMutationPhenotypePlants, Genetically ModifiedRNA, MessengerRNA TransportArabidopsis ProteinsFlagellinRNA, MessengerSDE5 protein, Arabidopsis

Identifiers

PMID28851870
PMCPMC5574965
OpenAlexW2749086596

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.