Evidence map›Paper›PMID 28851366›Full record

ArticleBMC biology2017

A widespread family of polymorphic toxins encoded by temperate phages.

Anne Jamet, Marie Touchon, Bruno Ribeiro-Gonçalves, João André Carriço, Alain Charbit, Xavier Nassif, Mario Ramirez, Eduardo P C Rocha

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 46 citations in OpenAlex.

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  13. Identification of a broadly conserved family of enzymes that hydrolyze (p)ppApp.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Review
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  16. Introduction: the secret lives of microbial mobile genetic elements.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  17. Intraspecific antagonism through viral toxin encoded by chronicPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
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  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Anne JametInstituto de Medicina Molecular, Instituto de Microbiologia, Faculdade de Medicina, Universidade de Lisboa, Lisboa, 1649-028, Portugal. anne.jamet@inserm.fr.ORCID 0000-0002-1902-6943
Marie TouchonMicrobial Evolutionary Genomics, Institut Pasteur, Paris, 75015, France.
Bruno Ribeiro-GonçalvesInstituto de Medicina Molecular, Instituto de Microbiologia, Faculdade de Medicina, Universidade de Lisboa, Lisboa, 1649-028, Portugal.
João André CarriçoInstituto de Medicina Molecular, Instituto de Microbiologia, Faculdade de Medicina, Universidade de Lisboa, Lisboa, 1649-028, Portugal.
Alain CharbitInstitut Necker Enfants-Malades, 14 rue Maria Helena Vieira Da Silva, Paris, 75014, France.
Xavier NassifInstitut Necker Enfants-Malades, 14 rue Maria Helena Vieira Da Silva, Paris, 75014, France.
Mario RamirezInstituto de Medicina Molecular, Instituto de Microbiologia, Faculdade de Medicina, Universidade de Lisboa, Lisboa, 1649-028, Portugal.
Eduardo P C RochaMicrobial Evolutionary Genomics, Institut Pasteur, Paris, 75015, France.
Délégation Paris 5 · FRUniversity of Lisbon · PTCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPolymorphic toxins (PTs) are multi-domain bacterial exotoxins belonging to distinct families that share common features in terms of domain organization. PTs are found in all major bacterial clades, including many toxic effectors of type V and type VI secretion systems. PTs modulate the dynamics of microbial communities by killing or inhibiting the growth of bacterial competitors lacking protective immunity proteins.

resultsIn this work, we identified a novel widespread family of PTs, named MuF toxins, which were exclusively encoded within temperate phages and their prophages. By analyzing the predicted proteomes of 1845 bacteriophages and 2464 bacterial genomes, we found that MuF-containing proteins were frequently part of the DNA packaging module of tailed phages. Interestingly, MuF toxins were abundant in the human gut microbiome.

conclusionsOur results uncovered the presence of the MuF toxin family in the temperate phages of Firmicutes. The MuF toxin family is likely to play an important role in the ecology of the human microbiota where pathogens and commensal species belonging to the Firmicutes are abundant. We propose that MuF toxins could be delivered by phages into host bacteria and either influence the lysogeny decision or serve as bacterial weapons by inhibiting the growth of competing bacteria.

Indexed as

Genome, BacterialBacteriaBacterial ToxinsBacteriophagesExotoxinsGastrointestinal MicrobiomeHumansProphagesBacterial ToxinsExotoxinsBacterial genomicsBacterial toxinsPhages

Identifiers

PMID28851366
PMCPMC5576092
OpenAlexW2753247802

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.