Evidence map›Paper›PMID 28851289›Full record

ArticleBMC cell biology2017

Coral cell separation and isolation by fluorescence-activated cell sorting (FACS).

Benyamin Rosental, Zhanna Kozhekbaeva, Nathaniel Fernhoff, Jonathan M Tsai, Nikki Traylor-Knowles

Open access · goldAbstract read
In one paragraph

Article in BMC cell biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
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  4. Review
  5. Fluorescent proteins generate a genetic color polymorphism and counteract oxidative stress in intertidal sea anemones.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  11. Methods for cell isolation and analysis of the highly regenerative tunicateFrontiers in cell and developmental biology · 2023
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Analysis of Spatial Gene Expression at the Cellular Level in Stony Corals.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Benyamin RosentalInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA. benyamin@stanford.edu.ORCID 0000-0002-3974-3296
Zhanna KozhekbaevaUniversity of Miami, Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Florida, 33149, USA.
Nathaniel FernhoffInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Jonathan M TsaiInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Nikki Traylor-KnowlesUniversity of Miami, Rosenstiel School of Marine and Atmospheric Science, 4600 Rickenbacker Causeway, Florida, 33149, USA. ntraylorknowles@rsmas.miami.edu.
Stanford University · USUniversity of Miami · USCalifornia Institute for Regenerative Medicine · US

Funding

Program in Translational and Experimental HematologyT32HL120824 · NHLBI · STANFORD UNIVERSITY · PI MAJETI, RAVINDRA · 2014 to 2023
$2.4M
NHLBI NIH HHS T32 HL120824
6 · The paper itself

Abstract

backgroundGeneralized methods for understanding the cell biology of non-model species are quite rare, yet very much needed. In order to address this issue, we have modified a technique traditionally used in the biomedical field for ecological and evolutionary research. Fluorescent activated cell sorting (FACS) is often used for sorting and identifying cell populations. In this study, we developed a method to identify and isolate different cell populations in corals and other cnidarians.

methodsUsing fluorescence-activated cell sorting (FACS), coral cell suspension were sorted into different cellular populations using fluorescent cell markers that are non-species specific. Over 30 different cell markers were tested. Additionally, cell suspension from Aiptasia pallida was also tested, and a phagocytosis test was done as a downstream functional assay.

resultsWe found that 24 of the screened markers positively labeled coral cells and 16 differentiated cell sub-populations. We identified 12 different cellular sub-populations using three markers, and found that each sub-population is primarily homogeneous. Lastly, we verified this technique in a sea anemone, Aiptasia pallida, and found that with minor modifications, a similar gating strategy can be successfully applied. Additionally, within A. pallida, we show elevated phagocytosis of sorted cells based on an immune associated marker.

conclusionsIn this study, we successfully adapted FACS for isolating coral cell populations and conclude that this technique is translatable for future use in other species. This technique has the potential to be used for different types of studies on the cellular stress response and other immunological studies.

Indexed as

Flow CytometryAnimalsAnthozoaBiomarkersCell SeparationReproducibility of ResultsSea AnemonesStaining and LabelingBiomarkersCell isolationCell sortingCellular labelingCoralFACS

Identifiers

PMID28851289
PMCPMC5575905
OpenAlexW2751142237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.