Evidence map›Paper›PMID 28849545›Full record

ArticleNeuroinformatics2017

CAS: Cell Annotation Software - Research on Neuronal Tissue Has Never Been so Transparent.

Karolina Nurzynska, Aleksandr Mikhalkin, Adam Piorkowski

Open access · bronzeAbstract read
In one paragraph

Article in Neuroinformatics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Novel Technique for Growth Plate Analysis Based on the Superposition of TMagnetic resonance in medical sciences : MRMS : an official journal of Japan Society of Magnetic Resonance in Medicine · 2020
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Karolina NurzynskaInstitute of Informatics, Silesian University of Technology, Gliwice, Poland. Karolina.Nurzynska@polsl.pl.ORCID http://orcid.org/0000-0001-5137-5732
Aleksandr MikhalkinLaboratory of Neuromorphology, Pavlov Institute of Physiology RAS, St. Petersburg, Russia.
Adam PiorkowskiDepartment of Geoinformatics and Applied Computer Science, AGH University of Science and Technology, Cracow, Poland.
AGH University of Krakow · PLPavlov Institute of Physiology of the Russian Academy of Sciences · RUSilesian University of Technology · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CAS (Cell Annotation Software) is a novel tool for analysis of microscopic images and selection of the cell soma or nucleus, depending on the research objectives in medicine, biology, bioinformatics, etc. It replaces time-consuming and tiresome manual analysis of single images not only with automatic methods for object segmentation based on the Statistical Dominance Algorithm, but also semi-automatic tools for object selection within a marked region of interest. For each image, a broad set of object parameters is computed, including shape features and optical and topographic characteristics, thus giving additional insight into data. Our solution for cell detection and analysis has been verified by microscopic data and its application in the annotation of the lateral geniculate nucleus has been examined in a case study.

Indexed as

SoftwareAlgorithmsAnimalsChlorocebus aethiopsHumansImage Processing, Computer-AssistedImmunohistochemistryMacacaMiceNerve NetNerve TissueNeuronsPitheciidae2D microscopyCell segmentationFluorescent microscopyHistological imagesImage processingImage understandingImmunohistological imagesMicroscopic imagesNeuron segmentationNeuroscientific dataNuclei segmentationShape featuresStatistical Dominance Algorithm

Identifiers

PMID28849545
PMCPMC5671565
OpenAlexW2745514333

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.