Evidence map›Paper›PMID 28848574›Full record

ArticleFrontiers in plant science2017

Uncovering Male Fertility Transition Responsive miRNA in a Wheat Photo-Thermosensitive Genic Male Sterile Line by Deep Sequencing and Degradome Analysis.

Jian-Fang Bai, Yu-Kun Wang, Peng Wang, Wen-Jing Duan, Shao-Hua Yuan, Hui Sun, Guo-Liang Yuan, Jing-Xiu Ma, Na Wang, Feng-Ting Zhang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
8.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 52 citations in OpenAlex.

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  11. Genome-Wide Identification, Characterization and Expression Analysis of theInternational journal of molecular sciences · 2023
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  12. Review
  13. Article
  14. Genome Wide Identification and Characterization of WheatInternational journal of molecular sciences · 2022
    Article
  15. Investigation of Roles ofPlants (Basel, Switzerland) · 2022
    Article
  16. Conservation and Divergence ofInternational journal of molecular sciences · 2022
    Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Jian-Fang BaiBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Yu-Kun WangBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Peng WangBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Wen-Jing DuanBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Shao-Hua YuanBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Hui SunBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Guo-Liang YuanBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Jing-Xiu MaBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Na WangBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Feng-Ting ZhangBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Li-Ping ZhangBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Chang-Ping ZhaoBeijing Engineering and Technique Research Center for Hybrid Wheat, Beijing Academy of Agriculture and Forestry SciencesBeijing, China.
Beijing Academy of Agricultural and Forestry Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs (miRNAs) are endogenous small RNAs which play important negative regulatory roles at both the transcriptional and post-transcriptional levels in plants. Wheat is the most commonly cultivated plant species worldwide. In this study, RNA-seq analysis was used to examine the expression profiles of miRNA in the spikelets of photo-thermosenisitive genic male sterile (PTGMS) wheat line BS366 during male fertility transition. Through mapping on their corresponding precursors, 917-7,762 novel miRNAs were found in six libraries. Six novel miRNAs were selected for examination of their secondary structures and confirmation by stem-loop RT-PCR. In a differential expression analysis, 20, 22, and 58 known miRNAs exhibited significant differential expression between developmental stages 1 (secondary sporogenous cells had formed), 2 (all cells layers were present and mitosis had ceased), and 3 (meiotic division stage), respectively, of fertile and sterile plants. Some of these differential expressed miRNAs, such as tae-miR156, tae-miR164, tae-miR171, and tae-miR172, were shown to be associated with their targets. These targets were previously reported to be related to pollen development and/or male sterility, indicating that these miRNAs and their targets may be involved in the regulation of male fertility transition in the PTGMS wheat line BS366. Furthermore, target genes of miRNA cleavage sites were validated by degradome sequencing. In this study, a possible signal model for the miRNA-mediated signaling pathway during the process of male fertility transition in the PTGMS wheat line BS366 was developed. This study provides a new perspective for understanding the roles of miRNAs in male fertility in PTGMS lines of wheat.

Indexed as

fertile transformationmiRNAphotoperiod thermo-sensitive genic male sterility (PTGMS)RNA-seqTriticum aestivum L.

Identifiers

PMID28848574
PMCPMC5550412
OpenAlexW2743655827

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.