Evidence map›Paper›PMID 28847957›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Knots can impair protein degradation by ATP-dependent proteases.

Álvaro San Martín, Piere Rodriguez-Aliaga, José Alejandro Molina, Andreas Martin, Carlos Bustamante, Mauricio Baez

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Is There a Functional Role for the Knotted Topology in Protein UCH-L1?Journal of chemical information and modeling · 2024
    Article
  4. Theta-curves in proteins.Protein science : a publication of the Protein Society · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. AAA+ proteins: one motor, multiple ways to work.Biochemical Society transactions · 2022
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Aim for the core: suitability of the ubiquitin-independent 20S proteasome as a drug target in neurodegeneration.Translational research : the journal of laboratory and clinical medicine · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Álvaro San MartínDepartamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile, Santiago 8380494, Chile.
Piere Rodriguez-AliagaBiophysics Graduate Group, University of California, Berkeley, CA 94720.
José Alejandro MolinaDepartamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile, Santiago 8380494, Chile.
Andreas MartinBiophysics Graduate Group, University of California, Berkeley, CA 94720.
Carlos BustamanteBiophysics Graduate Group, University of California, Berkeley, CA 94720; carlosjbustamante2@gmail.com mauricio.baez@ciq.uchile.cl.
Mauricio BaezDepartamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile, Santiago 8380494, Chile; carlosjbustamante2@gmail.com mauricio.baez@ciq.uchile.cl.

Funding

GENETICS TRAINING PROGRAM FOR PHD CANDIDATEST32GM007790 · NIGMS · STANFORD UNIVERSITY · PI BRUNET, ANNE, KINGSLEY, DAVID M · 1985 to 2020
$12.8M
THE PHYSICAL CHEMISTRY OF NUCLEIC ACIDSR01GM032543 · NIGMS · UNIVERSITY OF OREGON · PI CARLOS Jose BUSTAMANTE · 1985 to 2026
$6.4M
ATP-Dependent Protein Unfolding and Translocation by the Eukaryotic ProteasomeR01GM094497 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MARTIN, ANDREAS · 2011 to 2024
$3.7M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM032543NIGMS NIH HHS R01 GM094497NIGMS NIH HHS T32 GM007790
6 · The paper itself

Abstract

ATP-dependent proteases translocate proteins through a narrow pore for their controlled destruction. However, how a protein substrate containing a knotted topology affects this process remains unknown. Here, we characterized the effects of the trefoil-knotted protein MJ0366 from

Indexed as

Protein FoldingProteolysisEndopeptidase ClpGreen Fluorescent ProteinsHomeodomain ProteinsMethanocaldococcusProtein TransportProtein UnfoldingThermodynamicsEndopeptidase ClpGreen Fluorescent ProteinsHomeodomain ProteinsAAA+ ATPaseknotted proteinknot translocationprotein degradationtranslocation arrest

Identifiers

PMID28847957
PMCPMC5604015

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.