Evidence map›Paper›PMID 28847869›Full record

ArticleThe Journal of experimental medicine2017

Design and crystal structure of a native-like HIV-1 envelope trimer that engages multiple broadly neutralizing antibody precursors in vivo.

Max Medina-Ramírez, Fernando Garces, Amelia Escolano, Patrick Skog, Steven W de Taeye, Ivan Del Moral-Sanchez, Andrew T McGuire, Anila Yasmeen, Anna-Janina Behrens, Gabriel Ozorowski and 23 more

Abstract read
In one paragraph

Article in The Journal of experimental medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 155 papers.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed.

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  7. Priming of Multiple HIV Neutralizing B Cell Precursors in Humans.medRxiv : the preprint server for health sciences · 2026
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95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Max Medina-RamírezDepartment of Medical Microbiology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.ORCID http://orcid.org/0000-0001-6520-3501
Fernando GarcesDepartment of Integrative Structural and Computational Biology, Scripps CHAVI-ID, IAVI Neutralizing Antibody Center and Collaboration for AIDS Vaccine Discovery (CAVD), The Scripps Research Institute, La Jolla, CA.
Amelia EscolanoLaboratory of Molecular Immunology, The Rockefeller University, New York, NY.
Patrick SkogDepartment of Immunology and Microbiology, Scripps CHAVI-ID, The Scripps Research Institute, La Jolla, CA.ORCID http://orcid.org/0000-0002-5759-5071
Steven W de TaeyeDepartment of Medical Microbiology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Ivan Del Moral-SanchezDepartment of Medical Microbiology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Andrew T McGuireSeattle Biomedical Research Institute, Seattle, WA.ORCID http://orcid.org/0000-0003-1841-6859
Anila YasmeenDepartment of Microbiology and Immunology, Weill Medical College of Cornell University, New York, NY.ORCID http://orcid.org/0000-0002-2386-8991
Anna-Janina BehrensOxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford, England, UK.ORCID http://orcid.org/0000-0002-4270-6744
Gabriel OzorowskiDepartment of Integrative Structural and Computational Biology, Scripps CHAVI-ID, IAVI Neutralizing Antibody Center and Collaboration for AIDS Vaccine Discovery (CAVD), The Scripps Research Institute, La Jolla, CA.ORCID http://orcid.org/0000-0002-9695-8138
Tom L G M van den KerkhofDepartment of Medical Microbiology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Natalia T FreundLaboratory of Molecular Immunology, The Rockefeller University, New York, NY.
Pia DosenovicDepartment of Integrative Structural and Computational Biology, Scripps CHAVI-ID, IAVI Neutralizing Antibody Center and Collaboration for AIDS Vaccine Discovery (CAVD), The Scripps Research Institute, La Jolla, CA.
Yuanzi HuaDepartment of Integrative Structural and Computational Biology, Scripps CHAVI-ID, IAVI Neutralizing Antibody Center and Collaboration for AIDS Vaccine Discovery (CAVD), The Scripps Research Institute, La Jolla, CA.
Alexander D GitlinLaboratory of Molecular Immunology, The Rockefeller University, New York, NY.
Albert CupoDepartment of Microbiology and Immunology, Weill Medical College of Cornell University, New York, NY.
Patricia van der WoudeDepartment of Medical Microbiology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Michael GolabekDepartment of Microbiology and Immunology, Weill Medical College of Cornell University, New York, NY.ORCID http://orcid.org/0000-0001-5117-3380
Kwinten SliepenDepartment of Medical Microbiology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Tanya BlaneDepartment of Immunology and Microbiology, Scripps CHAVI-ID, The Scripps Research Institute, La Jolla, CA.ORCID http://orcid.org/0000-0001-8132-3167
Neeltje KootstraDepartment of Experimental Immunology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.ORCID http://orcid.org/0000-0001-9429-7754
Mariëlle J van BreemenDepartment of Medical Microbiology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands.
Laura K PritchardOxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford, England, UK.
Robyn L StanfieldDepartment of Integrative Structural and Computational Biology, Scripps CHAVI-ID, IAVI Neutralizing Antibody Center and Collaboration for AIDS Vaccine Discovery (CAVD), The Scripps Research Institute, La Jolla, CA.ORCID http://orcid.org/0000-0001-9521-9184
Max CrispinOxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford, England, UK.
Andrew B WardDepartment of Integrative Structural and Computational Biology, Scripps CHAVI-ID, IAVI Neutralizing Antibody Center and Collaboration for AIDS Vaccine Discovery (CAVD), The Scripps Research Institute, La Jolla, CA.
Leonidas StamatatosSeattle Biomedical Research Institute, Seattle, WA.
Per Johan KlasseDepartment of Microbiology and Immunology, Weill Medical College of Cornell University, New York, NY.ORCID http://orcid.org/0000-0001-8222-278X
John P MooreDepartment of Microbiology and Immunology, Weill Medical College of Cornell University, New York, NY.ORCID http://orcid.org/0000-0002-9902-6096
David NemazeeDepartment of Immunology and Microbiology, Scripps CHAVI-ID, The Scripps Research Institute, La Jolla, CA.ORCID http://orcid.org/0000-0002-4769-6311
Michel C NussenzweigLaboratory of Molecular Immunology, The Rockefeller University, New York, NY.ORCID http://orcid.org/0000-0003-0592-8564
Ian A WilsonDepartment of Integrative Structural and Computational Biology, Scripps CHAVI-ID, IAVI Neutralizing Antibody Center and Collaboration for AIDS Vaccine Discovery (CAVD), The Scripps Research Institute, La Jolla, CA wilson@scripps.edu.
Rogier W SandersDepartment of Medical Microbiology, Academic Medical Center, University of Amsterdam, Amsterdam, Netherlands r.w.sanders@amc.uva.nl.

Funding

Support Component D/Vaccine Discovery, Concept to ClinicUM1AI100663 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI CRISPIN, MAX · 2012 to 2018
$131.5M
Structural studies of native-like SOSIP trimersP01AI110657 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOORE, JOHN P · 2015 to 2024
$35.4M
Knock-in mice expressing germline-reverted broadly neutralizing HIV antibodiesR01AI073148 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 2007 to 2023
$8.2M
Designing and optimizing candidate HIV vaccines and boosting protocolsR01AI128836 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 2017 to 2021
$4.8M
NIAID NIH HHS P01 AI110657NIAID NIH HHS R01 AI073148NIAID NIH HHS R01 AI128836NIAID NIH HHS UM1 AI100663
6 · The paper itself

Abstract

Induction of broadly neutralizing antibodies (bNAbs) by HIV-1 envelope glycoprotein immunogens would be a major advance toward an effective vaccine. A critical step in this process is the activation of naive B cells expressing germline (gl) antibody precursors that have the potential to evolve into bNAbs. Here, we reengineered the BG505 SOSIP.664 glycoprotein to engage gl precursors of bNAbs that target either the trimer apex or the CD4-binding site. The resulting BG505 SOSIP.v4.1-GT1 trimer binds multiple bNAb gl precursors in vitro. Immunization experiments in knock-in mice expressing gl-VRC01 or gl-PGT121 show that this trimer activates B cells in vivo, resulting in the secretion of specific antibodies into the sera. A crystal structure of the gl-targeting trimer at 3.2-Å resolution in complex with neutralizing antibodies 35O22 and 9H+109L reveals a native-like conformation and the successful incorporation of design features associated with binding of multiple gl-bNAb precursors.

Indexed as

AnimalsAntibodies, NeutralizingCrystallography, X-RayGene Knock-In TechniquesHEK293 CellsHIV-1HIV Envelope Protein gp160HumansMiceProtein MultimerizationProtein Structure, TertiaryAntibodies, NeutralizingHIV Envelope Protein gp160

Identifiers

PMID28847869
PMCPMC5584115

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.