Evidence map›Paper›PMID 28847650›Full record

ArticleKidney international2017

Hypoxia-inducible factor prolyl-4-hydroxylation in FOXD1 lineage cells is essential for normal kidney development.

Hanako Kobayashi, Jiao Liu, Andres A Urrutia, Mikhail Burmakin, Ken Ishii, Malini Rajan, Olena Davidoff, Zubaida Saifudeen, Volker H Haase

Abstract read
In one paragraph

Article in Kidney international, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. PHD1-3 oxygen sensors in vivo-lessons learned from gene deletions.Pflugers Archiv : European journal of physiology · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Oxygen-sensing mechanisms in development and tissue repair.Development (Cambridge, England) · 2021
    Review
  11. Metabolic programming of nephron progenitor cell fate.Pediatric nephrology (Berlin, Germany) · 2021
    Review
  12. Article
  13. Article
  14. Cancers · 2020
    Article
  15. Metabolic requirements of the nephron.Pediatric nephrology (Berlin, Germany) · 2020
    Review
  16. Article
  17. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Hanako KobayashiDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee, USA; Medical and Research Services, Department of Veterans Affairs Hospital, Tennessee Valley Healthcare System, Nashville, Tennessee, USA.
Jiao LiuSection of Pediatric Nephrology, Department of Pediatrics, Tulane University Health Sciences Center, New Orleans, Louisiana, USA; The Hypertension and Renal Centers of Excellence, Tulane University Health Sciences Center, New Orleans, Louisiana, USA.
Andres A UrrutiaDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Mikhail BurmakinDivision of Vascular Biology, Department of Medical Biochemistry and Biophysics, Karolinska Institute, Stockholm, Sweden.
Ken IshiiDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Malini RajanDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee, USA.
Olena DavidoffDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee, USA; Medical and Research Services, Department of Veterans Affairs Hospital, Tennessee Valley Healthcare System, Nashville, Tennessee, USA.
Zubaida SaifudeenSection of Pediatric Nephrology, Department of Pediatrics, Tulane University Health Sciences Center, New Orleans, Louisiana, USA; The Hypertension and Renal Centers of Excellence, Tulane University Health Sciences Center, New Orleans, Louisiana, USA.
Volker H HaaseDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee, USA; Medical and Research Services, Department of Veterans Affairs Hospital, Tennessee Valley Healthcare System, Nashville, Tennessee, USA; Department of Cancer Biology and Department of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee, USA. Electronic address: volker.haase@vanderbilt.edu.
Vanderbilt University · USTulane University · USVA Tennessee Valley Healthcare System · USKarolinska Institutet · SE

Funding

Coordinating and Bioinformatics Unit for the MMPC/DiaCompU24DK076169 · NIDDK · AUGUSTA UNIVERSITY · PI MCINDOE, RICHARD A. · 2006 to 2018
$42.4M
Vanderbilt Diabetes Research CenterP30DK020593 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI OWEN P MCGUINNESS · 2012 to 2026
$29.3M
Molecular Mechanisms of Renal InjuryR01DK081646 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HAASE, VOLKER HANS · 2008 to 2021
$4.3M
Metabolic Reprogramming in Acute Kidney InjuryR01DK101791 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HAASE, VOLKER HANS · 2014 to 2018
$1.8M
Cellular and Molecular Mechanisms of Renal AnemiaI01BX002348 · VA · VETERANS HEALTH ADMINISTRATION · PI Volker Hans Haase · 2014 to 2026
–
BLRD VA I01 BX002348NIDDK NIH HHS P30 DK020593NIDDK NIH HHS R01 DK081646NIDDK NIH HHS R01 DK101791
6 · The paper itself

Abstract

Hypoxia in the embryo is a frequent cause of intra-uterine growth retardation, low birth weight, and multiple organ defects. In the kidney, this can lead to low nephron endowment, predisposing to chronic kidney disease and arterial hypertension. A key component in cellular adaptation to hypoxia is the hypoxia-inducible factor pathway, which is regulated by prolyl-4-hydroxylase domain (PHD) dioxygenases PHD1, PHD2, and PHD3. In the adult kidney, PHD oxygen sensors are differentially expressed in a cell type-dependent manner and control the production of erythropoietin in interstitial cells. However, the role of interstitial cell PHDs in renal development has not been examined. Here we used a genetic approach in mice to interrogate PHD function in FOXD1-expressing stroma during nephrogenesis. We demonstrate that PHD2 and PHD3 are essential for normal kidney development as the combined inactivation of stromal PHD2 and PHD3 resulted in renal failure that was associated with reduced kidney size, decreased numbers of glomeruli, and abnormal postnatal nephron formation. In contrast, nephrogenesis was normal in animals with individual PHD inactivation. We furthermore demonstrate that the defect in nephron formation in PHD2/PHD3 double mutants required intact hypoxia-inducible factor-2 signaling and was dependent on the extent of stromal hypoxia-inducible factor activation. Thus, hypoxia-inducible factor prolyl-4-hydroxylation in renal interstitial cells is critical for normal nephron formation.

Indexed as

AnemiaAnimalsBasic Helix-Loop-Helix ProteinsCell HypoxiaClinical Trials, Phase III as TopicDisease Models, AnimalEndothelial PAS Domain-Containing Protein 1Enzyme InhibitorsForkhead Transcription FactorsHumansHydroxylationHypoxia-Inducible Factor-Proline DioxygenasesKidneyKidney DiseasesMiceMolecular Targeted TherapyBasic Helix-Loop-Helix ProteinsEgln1 protein, mouseEndothelial PAS Domain-Containing Protein 1Enzyme InhibitorsForkhead Transcription FactorsFoxd1 protein, mouseHypoxia-Inducible Factor-Proline DioxygenasesPHD3 protein, mouseProcollagen-Proline Dioxygenasechronic kidney diseasehypoxiahypoxia-inducible factorpericytesprolyl-4-hydroxylaserenal development

Identifiers

PMID28847650
PMCPMC5696043
OpenAlexW2747589356

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.